Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03196 ATGGAAATCCCAACCACACTCACCGCCTTGCTCCACTCCGTCGCCGCCAAATTCCCCTCCCGCCGAGCGCTCTCCGTCGCCGCCAAATTCGACCTCACCCACTCCCGCCTTCACCAACTGGCGGAATCTGCCGCCCAACGGTTGATGATCGCCGGGATCAAACCCGGCGACGTCGTCGCCCTCACCTTCCCCAACACCGTCGAGTTTGTTGTCATGTTTCTAGCCGTTATTCGAGTGCGAGCCACAGCCGCGCCGTTGAACTCGGTTTACACAGCCGAAGAGTTTGAGTTTTATTTATCCGACTCCGAGGCCAAGCTTCTCCTAACATCCTCAGAAGGAAACAACTCAGCTCAAGCCGCAGCTTCGAAACTCAATATTCCTCACGCTACGGCTTCGATAACCCAAGCCGTTAATAGCGAAGCCGAGCTGAGTCTCTCGCTGAGTCAATCCGATTCGGTTATCTCCGTCGACTCGGTTGAGTCAGTAGTTAACGATCCTGATGACGTGGCGCTTTTCCTTCACACCTCGGGTACCACAAGCCGTCCCAAGGGCGTGCCGCTGACTCAGCACAACTTGCTCTCTTCCGTACGGAACATTAAGTCGGTGTACCGACTCACTGAGTCTGACTCGACGGTGATTGTGCTTCCGCTTTTCCACGTGCACGGTTTGATCGCGGGGTTGCTGAGTTCCCTCGGCGCCGGCGCTGCGGTGGCACTGCCTGCGGCCGGGAGGTTTTCCGCCACAGCGTTCTGGAAGGACATGGTGAAGAACAACGCCACGTGGTACACTGCGGTCCCTACCATACACCAGATTATACTGGATCGCCACGCGAATAACCCTGAACCGGTTTACCCGCGGCTCCGGTTCATACGAAGCTGCAGCGCGTCGCTGGCACCGGCTATTCTGGGTAAACTCGAGGAGGCTTTCAGTGCGCCGGTGTTGGAGGCTTATGCGATGACGGAAGCGTCGCATCTCATGGCTTCGAACCCGTTGCCGCAAGACGGGCCGCACAAGGCCGGGTCGGTTGGGAAGCCCGTGGGCCAAGAAATGGTTATTTTGGACCAAACGGGCCGGGTTCAAGAAGCTGAAGTTAGCGGAGAAGTTTGCATTCGTGGCCCCAATGTTACGAAGGGATATAAAAATAACGTGGATGCCAATACGGCGGCGTTTCAGTTTGGTTGGTTCCATACCGGTGATGTTGGTTACTTGGATTCTGATGGGTATTTGCACCTCGTGGGTCGGATCAAGGAACTCATAAACCGAGGAGGCGAAAAGATATCACCTATAGAAGTTGATGCTGTCCTTCTTTCACATCCGGACATTGCTCAAGCAGTTGCTTTCGGAGTGCCTGATGCCAAGTATGGTGAAGAGATATATTGTGCTGTCATCCCAAGAGAAGGATCAAGCGTTGATGAGGCAGAGGTGCTAAGATATAGCAAGAATAATCTTGCATCCTTCAAAGTTCCCAAAAAGGTCTTCATTACTGATTCTTTGCCCAAGACTGCCACCGGAAAGATTTTGCGTCGTCTTGTGGCAGAACACTTTGTTACCCAAATTTGA 1560 0.5385 MEIPTTLTALLHSVAAKFPSRRALSVAAKFDLTHSRLHQLAESAAQRLMIAGIKPGDVVALTFPNTVEFVVMFLAVIRVRATAAPLNSVYTAEEFEFYLSDSEAKLLLTSSEGNNSAQAAASKLNIPHATASITQAVNSEAELSLSLSQSDSVISVDSVESVVNDPDDVALFLHTSGTTSRPKGVPLTQHNLLSSVRNIKSVYRLTESDSTVIVLPLFHVHGLIAGLLSSLGAGAAVALPAAGRFSATAFWKDMVKNNATWYTAVPTIHQIILDRHANNPEPVYPRLRFIRSCSASLAPAILGKLEEAFSAPVLEAYAMTEASHLMASNPLPQDGPHKAGSVGKPVGQEMVILDQTGRVQEAEVSGEVCIRGPNVTKGYKNNVDANTAAFQFGWFHTGDVGYLDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDAKYGEEIYCAVIPREGSSVDEAEVLRYSKNNLASFKVPKKVFITDSLPKTATGKILRRLVAEHFVTQI 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03196 519 FunFam 4-coumarate--CoA ligase 2 417 518 - -
Spst4g03196 519 Pfam AMP-binding enzyme 14 421 IPR000873 -
Spst4g03196 519 Pfam AMP-binding enzyme C-terminal domain 430 505 IPR025110 -
Spst4g03196 519 SUPERFAMILY Acetyl-CoA synthetase-like 5 517 - -
Spst4g03196 519 FunFam Peroxisomal-coenzyme A synthetase 6 414 - -
Spst4g03196 519 Gene3D - 415 517 IPR045851 -
Spst4g03196 519 Gene3D - 5 414 IPR042099 -
Spst4g03196 519 CDD FACL_fum10p_like 19 513 IPR045310 GO:0016874
Spst4g03196 519 PANTHER ACYL-COA SYNTHETASE 6 515 - -
Spst4g03196 519 ProSitePatterns Putative AMP-binding domain signature. 172 183 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03196 Spst-Chr4 71563816 71567397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03196 5 519 Monolignol Biosynthesis Gene Families AT4G05160 28.814 2.80e-58 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03196 K22133 - gmx:100779306 866.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g03196 4 71563816 71567397 Spst10g00966 10 10370238 10373624 ECH
Spst4g03196 4 71563816 71567397 Spst4g03196 4 71563816 71567397 ECH
Spst4g03196 4 71563816 71567397 Spst10g00966 10 10370238 10373624 PCT