Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03168 ATGTCTAACTTGGAGCTGTTCCACACCAAACACTTCCTCTCCTACCTCACTCTCTTCTTCCCAAGCTCTAACTCACAAACCCAAATGCCTAAATCAGATGAATTCCACACCTTTCACCTCACTCTCTACACATTCATCTCCCTCTTGTTGTTCCATGTTTCCACAGCACAAGCACAATCCTCCATGGAGCCTGTGCCCACATACATCACCCACCACAGCTGGGAGCCCTCGGTGGCCATCACAGTTGGAGCCATCATCTTTGCTCTTCTTGTGATGGGCATCATCTCCATCTACCTCCGTAGGTGTGCTGAGTCACGCATCATCATCACCACGCAGACCACCACCCCAGTCCCCTGCTCCTGCGCACAGGGGATCAACAGAGAACTCCTGAATACCTTCCCCACCCTCTTCTACTCCAACATCAAGGACCTCAAAAAGGGTGAAGAAACGCTCGAATGTGCTGTGTGCTTGACGGATTTCTCAGAGAAAGACGCCCTCAGACTCCTCCCCAAATGCAACCACGTGTTTCACCCTCACTGCATTGATTCCTGGCTCGCTTCCCACGTGACATGCCCCGTTTGCCGCGCGAATCTAAGCCAGGATTCGTGCCAGGTTGCCATAACAGTCCCTACCCTTCATGATGAGGAAGTTTCCCGAAGTGAAGAAACCATGGCAGAACCAAATCAAAACACAAACATGAACCATGCCATGAATCAGGTTTGTGTTGGAACTCCTACATTGACCAATGATACAGCCAAAACAGTGTATATAAGTGAAGAACAGTCTTCATCTCCTGATCTTCCTTCTGAGTTAGACACAAACTCAAATTCTGTCACTAGTGATTTGGTGGTTGTTGCTGCTGAGAGGAACCTTTCAAGGTCAAACTCTACAGGGCATTCTCTTGTGGGTGTGGAGAGGTACACCTTGAGGTTACCCGAAGACGTGAGGAGGTACATTCTGGTGAACCATGGAAGGAGTGTTCAACGTTCTGCCAGTGTTAAGGGTACGTGTTGGAGTGATAGCGAGGAGAGTTATGCGGAAAAGAGGGTGGAGAAGAGGTGGGTGATTTGTACGCCACCGTTTGTGGCGCGCCATACCTGA 1101 0.4968 MSNLELFHTKHFLSYLTLFFPSSNSQTQMPKSDEFHTFHLTLYTFISLLLFHVSTAQAQSSMEPVPTYITHHSWEPSVAITVGAIIFALLVMGIISIYLRRCAESRIIITTQTTTPVPCSCAQGINRELLNTFPTLFYSNIKDLKKGEETLECAVCLTDFSEKDALRLLPKCNHVFHPHCIDSWLASHVTCPVCRANLSQDSCQVAITVPTLHDEEVSRSEETMAEPNQNTNMNHAMNQVCVGTPTLTNDTAKTVYISEEQSSSPDLPSELDTNSNSVTSDLVVVAAERNLSRSNSTGHSLVGVERYTLRLPEDVRRYILVNHGRSVQRSASVKGTCWSDSEESYAEKRVEKRWVICTPPFVARHT 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03168 366 SMART ring_2 153 194 IPR001841 -
Spst4g03168 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 202 IPR013083 -
Spst4g03168 366 ProSiteProfiles Zinc finger RING-type profile. 153 195 IPR001841 -
Spst4g03168 366 Pfam Ring finger domain 152 195 IPR001841 -
Spst4g03168 366 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 52 326 - -
Spst4g03168 366 CDD RING-H2_EL5-like 152 195 - -
Spst4g03168 366 FunFam E3 ubiquitin-protein ligase ATL6 115 201 - -
Spst4g03168 366 SUPERFAMILY RING/U-box 138 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03168 Spst-Chr4 71297101 71298201 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03168 31 320 Rapid Response to Elicitors AT3G05200 35.526 6.51e-49 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03168 K10664 - gmx:100782532 465.307