Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03167 ATGAACATCATACTACTTCTTATCCTCCTAGCATCATCCTCTTCTTCAGTGTCCTGCACTGCACGCGCTCAGTCCCCTTCACCAGTAACCCCCAATGAAGTCACCGTCAAAGCAACCCTTCTCATGTCACTCGTCATCTTCCTCTTCGCCCTCCTCCTCACCGCATTCTGCTCCCTCTTCGTCCGCTACTTCTCCCGCCAGCACCCGGCGTTTCTGCGAATCACACGCGGACTCGACCCGCGCGTGCTCGCCACGTGCCCTGTTATGTCCTACTCCGCACTCAAACTGAATCACCTCAAGTCGCCGCAAAACGCGGCGTTGCAGTGCACGGTGTGTCTGGCGGATTTCGACGACGCCGACGCTCTCCGCCTGCTGCCGAAGTGTGGTCACGTGTTCCACACACACTGCATCGACGCGTGGCTCGCAGCGCACGTGACGTGTCCCGTGTGTCGCGGCGAAGTGAGAGCAGAAACTGAGGGGAAGACACGTGTGCGGCGCGTGTTAGAGGAAGATTCTGGAGACTTTAGGGTTTTTGTAAGGTCACATTCTACGGGCTCTTTGGATGGGTTTTCCATGAAATTTTCTGAGGATGTCGCGAAGAAGGTTCCAGAAGATGGTGAACGGATGAAGCGTTCGTCCAGTTACGACGTCGTTTTGGGGATTGGAGAAGTAAATGTGGGTAGCACTAAAACTAACAATAAGTGGGTTTTAACGATGAATCCTCCTACTGTTTCTGGAAATTCGATGATTCCGAGGTTGTGGGGTGCTTCTGTTGTTAGAGAAGAGAAAGAGTTTGAAGGAGCAATGTTTTTCCACTCTCAAGTTTGA 828 0.5266 MNIILLLILLASSSSSVSCTARAQSPSPVTPNEVTVKATLLMSLVIFLFALLLTAFCSLFVRYFSRQHPAFLRITRGLDPRVLATCPVMSYSALKLNHLKSPQNAALQCTVCLADFDDADALRLLPKCGHVFHTHCIDAWLAAHVTCPVCRGEVRAETEGKTRVRRVLEEDSGDFRVFVRSHSTGSLDGFSMKFSEDVAKKVPEDGERMKRSSSYDVVLGIGEVNVGSTKTNNKWVLTMNPPTVSGNSMIPRLWGASVVREEKEFEGAMFFHSQV 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03167 275 CDD RING-H2_EL5-like 108 151 - -
Spst4g03167 275 SUPERFAMILY RING/U-box 105 156 - -
Spst4g03167 275 FunFam E3 ubiquitin-protein ligase ATL6 66 157 - -
Spst4g03167 275 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Spst4g03167 275 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 20 166 - -
Spst4g03167 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 160 IPR013083 -
Spst4g03167 275 Pfam Ring finger domain 108 151 IPR001841 -
Spst4g03167 275 SMART ring_2 109 150 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03167 Spst-Chr4 71280728 71281555 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03167 1 241 Rapid Response to Elicitors AT3G05200 29.508 1.16e-28 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03167 K10664 - gmx:102665105 251.136