Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03162 ATGTTAGGGCAGAGAGAGTGGCAAAACAACTTTGACGAATTTTTGGATGGAGTTATTGATGAGCACCCTAATGAGATAGTGCTTTGTAATCCAAGTGTGGAGGTACATGGTGATTGGGATCGGGATGAAGTTAAAGGTGAAGACCAGACTGATTTTCTGGACATTTTGTTAAGGATCCAAAAGACAAACACCACGGGGTTCCATATTGATAGAACAACCATAAAGGCATTGACCCTGGTTATGTTCGCGGCAGGTGAGATAAGGAATGTGGTTAGTGGCAGAACTCGCGTGACTGAGGAAGATTTAAGCAGCATGCATTACTTGAAGGCAGTGATCAAAGAAACTTTTAGATTACACCCCCCTGGACCCTTGTTGATTCCAAGGGAATCCATGGAAGATGTGAAAGTGATGGGTTATGACATTGCAAAGGGCACACAAGTAATAGTGAATGCTTGGACAATTGGAAGAGATGGTTGTTATTGGGAGCAACCTCTGGAGTTCAAACCAGAGAGATTCTTAAATAATTCAATAGATGTGAAAGGACATGATTTTGAATTGATACCATTTGGAGCAGGAAGGAGGGGTTGTCCAGGAATAGTATTTGCCATGAATGTGATTGAGCTGGTCCTAGCAAAGCTTATTCACCATTTTGATTGGGAAGTGCCTGGTGGAGTAGTGGGTGATCAGACACTGGACATGACTCAAAAGGCAGGGTTAACCATTCATAGAAAATTCCCTCTTGTGGCAACTGCATCGATCCCTACATGTATTAATAAGTGA 780 0.4244 MLGQREWQNNFDEFLDGVIDEHPNEIVLCNPSVEVHGDWDRDEVKGEDQTDFLDILLRIQKTNTTGFHIDRTTIKALTLVMFAAGEIRNVVSGRTRVTEEDLSSMHYLKAVIKETFRLHPPGPLLIPRESMEDVKVMGYDIAKGTQVIVNAWTIGRDGCYWEQPLEFKPERFLNNSIDVKGHDFELIPFGAGRRGCPGIVFAMNVIELVLAKLIHHFDWEVPGGVVGDQTLDMTQKAGLTIHRKFPLVATASIPTCINK 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03162 259 PRINTS E-class P450 group I signature 186 196 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst4g03162 259 PRINTS E-class P450 group I signature 196 219 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst4g03162 259 PRINTS E-class P450 group I signature 150 174 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst4g03162 259 PRINTS E-class P450 group I signature 109 127 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst4g03162 259 Pfam Cytochrome P450 86 226 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst4g03162 259 Gene3D Cytochrome P450 86 252 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst4g03162 259 PRINTS P450 superfamily signature 110 121 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst4g03162 259 PRINTS P450 superfamily signature 196 207 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst4g03162 259 PRINTS P450 superfamily signature 187 196 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst4g03162 259 PANTHER CYTOCHROME P450 71B11-RELATED 7 85 - -
Spst4g03162 259 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 189 198 IPR017972 GO:0005506|GO:0016705
Spst4g03162 259 SUPERFAMILY Cytochrome P450 5 250 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03162 Spst-Chr4 71214890 71217167 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03162 9 255 Cytochrome P450 AT3G48310 43.273 5.27e-72 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03162 - - gmx:100810154 329.717