Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03145 ATGGCTCCGCCGCCTCCGGTGGAACACAACGCCGACTCCACCACCACCGCCTCAGAGTCTCAGGGGAGATCCATTCCCACGCCGTTTCTCACCAAAACCTTTCAACTCGTCGACGATCAATCCATCGACGATGTTATCTCCTGGAACGACGACGGATCAACGTTCATTGTTTGGAACCCTACCGTCTTCGCCAGAGACTTGCTTCCTAAATATTTTAAACACAACAATTTCTCCAGCTTCGTTCGCCAACTCAACACTTACGGATTCAGGAAGGTTGTTCCTGATCGGTGGGAATTCTCGAACGAGTATTTCCGCCGAGGCAAAAAGCAGCTTCTGTGCGAAATTCAACGGCGGAAGATCTCGTCGCCAGCGCAGTCTCCGACAGCGCCGGCGACAGTAGCTGTGCCGTCGCCGATGCCGTTGACTGCGGTTCCGATCATATCACCGTCGAGCTCCGGCGAGGAACAGGTGTTATCGTCGAACTCGTCGCCGTCGCTCGTGCCGGCGGAGCTCCTCGACGAGAACGAGAGGCTGAGGAAAGAGAACATTCAGTTAACGAAAGATCTCGCGGAGATGAGATCGCTCTGCAATAATATCTATACTCTCATGTCAAATTACGCAAACGCCAACGGCAGAGGCAGCGGTAGCGACAACGCGAACGGAAATGTTAACGGGATCAGAAGTTATCAAACGGACGGCGGTGCCGGTGGCGTGCAGGGAAGTCGGGAGTCCGACATGAGGACGGTGAAGCCGCTCAATTTATTGCCCTCGAAACGGAGCTCCGGCGAGTGCACGGCGGAGATGAATCCAAAATTGTTTGGCGTGGCGATTGGAGCTAAGCGCGCGAGGGAGGGTGGAGGAAGCGGTGGGGATTGTAGAGGAGGTATAGAAGAGGATGATACACGGTTGCGTCTGCATCACCCTGGTCCTGCGGATGTAAAACCTGAGCCGTTGGATTGCCAGAACCACCGGGAGAATCAAGAAACACCGTGGTTGAGTCAGTGTCACATGGCAAATCAGAAGGTGTGTAACTGA 1035 0.544 MAPPPPVEHNADSTTTASESQGRSIPTPFLTKTFQLVDDQSIDDVISWNDDGSTFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNEYFRRGKKQLLCEIQRRKISSPAQSPTAPATVAVPSPMPLTAVPIISPSSSGEEQVLSSNSSPSLVPAELLDENERLRKENIQLTKDLAEMRSLCNNIYTLMSNYANANGRGSGSDNANGNVNGIRSYQTDGGAGGVQGSRESDMRTVKPLNLLPSKRSSGECTAEMNPKLFGVAIGAKRAREGGGSGGDCRGGIEEDDTRLRLHHPGPADVKPEPLDCQNHRENQETPWLSQCHMANQKVCN 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03145 344 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 20 208 IPR027725 -
Spst4g03145 344 MobiDBLite consensus disorder prediction 9 25 - -
Spst4g03145 344 SUPERFAMILY "Winged helix" DNA-binding domain 26 118 IPR036390 -
Spst4g03145 344 ProSitePatterns HSF-type DNA-binding domain signature. 68 92 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst4g03145 344 Gene3D - 22 119 IPR036388 -
Spst4g03145 344 FunFam Heat stress transcription factor B-4 21 119 - -
Spst4g03145 344 PRINTS Heat shock factor (HSF) domain signature 29 52 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst4g03145 344 PRINTS Heat shock factor (HSF) domain signature 80 92 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst4g03145 344 PRINTS Heat shock factor (HSF) domain signature 67 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst4g03145 344 Coils Coil 175 195 - -
Spst4g03145 344 MobiDBLite consensus disorder prediction 1 25 - -
Spst4g03145 344 SMART hsfneu3 25 118 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst4g03145 344 Pfam HSF-type DNA-binding 29 118 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03145 Spst-Chr4 70915647 70916823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03145 5 344 HSF AT5G62020 46.369 1.46e-93 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Spst4g03145 HSF_DNA-bind 8e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03145 K09419 - gmx:100812267 486.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g03145 4 70915647 70916823 Spst4g03145 4 70915647 70916823 ECH
Spst4g03145 4 70915647 70916823 Spst10g01001 10 10657018 10658170 PCT