Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03141 ATGGAAGGTCATAGTGAGATGGGTCTAATTGGAGAGAGTTTTGATACTAGTAATTTGCTGGGGAGGATGAGGGATGATGACTATGAAAGCCGGTCTGGAAGTGATAATTTTGATGGTGGATCTGGTGATGATCAAGATGCTGGAGATGATCAGCCACAGAGAAAGAAGAAGAAATACCATAGACACACTCCTCAACAAATTCAGGAGCTTGAAGGGTTCTTCAAGGAGTGTCCTCATCCTGATGAGAAGCAAAGAACAGATCTTAGTAAGAGGCTTGGCTTGGAGAATAAGCAAGTCAAGTTCTGGTTTCAAAACCGACGAACCCAAATGAAGACACAACTGGAACGCCATGAGAACATGGTTCTTAAGCAGGAAAATGACAAGCTCCGAGCTGAGAATGGTGTAATGAAGGAAGCTTTGGCAAATCCTATATGTAACAACTGTGGTGGTCCAGCCATTCCTGGTCAAATTTCATTGGAGGAGCACCAGACTAGAATTGAGAATGCTCGACTGAAGGATGAACTGAATCGAATATGTACATTGGCAAACAAGTTTCTGGGCCGGTCCCTCTCATCACTGGCCAGTCCCATGTCTCTGCCACCGACAAATTCTGGTCTAGAGCTTGCTATTGGAAGAAATGGAATTGGTGGTTCAAGCAATTTCGGCATGCCCTTGCCTATTGGATTTGATGTGGGAGATGGAGTTTTGGGCTCCTCGCCTGCAATGCCTAATATGAGTGTTAGATCACCAATGGGAATGATGGGAAATGAAATCCATCTTGAGAGATCTATGCTTATAGATATTGCAGTAAATGCTATGGATGAATTAGTCAAGATGGCTCAACAAGATAGCCCACTTTGGATTAAGAGTTCTGATGGCAGGAATGAAGTACTGAATCATGAGGAGTATGCAGGAATGTTTTCTGCTTATGCTGGAGCAAAACCTGCTGGTTATGTAACTGAAGCTACAAGAGCAACTGGAGTTGTATTAGCCAGCAGTTTGGGCCTTGTGGAAACATTGATGGATGTGGATCGATGGTTGGAGATGTTTTCATGTATGGTTGCTAGTGCTTGCACTTTGGACGTATTATCTAGTGGTACGGGTGGAACAAGAAATGGCGCTTTGCAAGTGATGCTGGCGGAGGTTCAATTGCTTTCTCCACTAGTGCCTGCTCGTCAAATGAGTTTCCTCAGGTTTTGCAAGCAGCATGCCGAAGGTGTATGGGCTGTGGTTGATGTTTCCGTTGACATTATTCGAAATGCTTCCAATTCACATCCATTAATGAGCTGCAGGAGGCTTCCTTCTGGGTGTATTATTCAGGATATGCCCAATGGTTTGTCCAAGATTACTTGGGTGGAACATTCCCAGTATGATGAGAGTGTGATCCACCAACTTTGTCGCCCATTGGTTAGTTCTGGCATTGGCTTTGGTGCTCACAGATGGATTGCTTCTCTCCTGAGGCAGTGTGAGTGCTTGGCAATCCTCATGTCGCCTTCTGGTCCATCTGACGACCCCACTGTCATTAGCCAACCCAATAGGAGAAGCGTGATGAAGCTCGCACAACGCATGACTGAGTACTTCTGCTCAGGGATCTGTGCTTCATCTGCGCGCAAATGGGATGTCCTTCACATTGGTAATCTGGCTGATGACATGAGAATCATGGCCCGGAAAATTGTGGATGACCCAAATGAGGCTCCTGGAATTGTGCTGAGTGCTTCAACTTCTGTCTGGATGCCTGTGTCACGGCAAAGGTTGTTTGACTTTCTGCGTAATGAACAGTTGAGAGGCGAATGGGACTTGCTGTCCAAAGGTGGTCCAATGAAGGAGATGCTCCATGTTCCTAAAGGACAAGACCATGGAAACTGTGTTTCCATCCTTCATTATGCTAATAACGAGAGCAACGTGCTATATCTGCAAGAGTCATGGACTGATGCCACCGGCTCCATGGTAGTGTATTCCCCGATCAACATGCAGTCCTTGAACATGGTGATGAATTGTGGAGATTCATCGTTCGTTGCTCTCCGTCCGTCAGGCTTTGCTATTCTGCCAGATGGCCACTCAAACAACGGTGACGGCAGTGATGGTAGCGGCAACTGCTTGCTAACAGTTGGGTTACAAATGTTACAGAATGGCAACCAGTCAGCTAAGTTCACAATGGAGTCAGTTGAAACGGTTAATTCCCTCATCTCATGCACCATTCAGAAGATCAAAGATGCACTAGGAGTTGCATGA 2232 0.4583 MEGHSEMGLIGESFDTSNLLGRMRDDDYESRSGSDNFDGGSGDDQDAGDDQPQRKKKKYHRHTPQQIQELEGFFKECPHPDEKQRTDLSKRLGLENKQVKFWFQNRRTQMKTQLERHENMVLKQENDKLRAENGVMKEALANPICNNCGGPAIPGQISLEEHQTRIENARLKDELNRICTLANKFLGRSLSSLASPMSLPPTNSGLELAIGRNGIGGSSNFGMPLPIGFDVGDGVLGSSPAMPNMSVRSPMGMMGNEIHLERSMLIDIAVNAMDELVKMAQQDSPLWIKSSDGRNEVLNHEEYAGMFSAYAGAKPAGYVTEATRATGVVLASSLGLVETLMDVDRWLEMFSCMVASACTLDVLSSGTGGTRNGALQVMLAEVQLLSPLVPARQMSFLRFCKQHAEGVWAVVDVSVDIIRNASNSHPLMSCRRLPSGCIIQDMPNGLSKITWVEHSQYDESVIHQLCRPLVSSGIGFGAHRWIASLLRQCECLAILMSPSGPSDDPTVISQPNRRSVMKLAQRMTEYFCSGICASSARKWDVLHIGNLADDMRIMARKIVDDPNEAPGIVLSASTSVWMPVSRQRLFDFLRNEQLRGEWDLLSKGGPMKEMLHVPKGQDHGNCVSILHYANNESNVLYLQESWTDATGSMVVYSPINMQSLNMVMNCGDSSFVALRPSGFAILPDGHSNNGDGSDGSGNCLLTVGLQMLQNGNQSAKFTMESVETVNSLISCTIQKIKDALGVA 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03141 743 ProSiteProfiles 'Homeobox' domain profile. 53 113 IPR001356 GO:0003677
Spst4g03141 743 SUPERFAMILY Bet v1-like 261 491 - -
Spst4g03141 743 MobiDBLite consensus disorder prediction 1 64 - -
Spst4g03141 743 Gene3D - 43 129 - -
Spst4g03141 743 SUPERFAMILY Bet v1-like 513 711 - -
Spst4g03141 743 CDD START_ArGLABRA2_like 262 490 - -
Spst4g03141 743 FunFam Homeobox-leucine zipper protein HDG1 41 129 - -
Spst4g03141 743 Coils Coil 107 127 - -
Spst4g03141 743 CDD homeodomain 56 113 IPR001356 GO:0003677
Spst4g03141 743 MobiDBLite consensus disorder prediction 19 33 - -
Spst4g03141 743 SMART START_1 267 491 IPR002913 GO:0008289
Spst4g03141 743 SUPERFAMILY Homeodomain-like 36 113 IPR009057 -
Spst4g03141 743 ProSiteProfiles START domain profile. 258 494 IPR002913 GO:0008289
Spst4g03141 743 SMART HOX_1 55 117 IPR001356 GO:0003677
Spst4g03141 743 Pfam Homeodomain 56 111 IPR001356 GO:0003677
Spst4g03141 743 Pfam START domain 268 491 IPR002913 GO:0008289
Spst4g03141 743 Gene3D - 266 475 IPR023393 -
Spst4g03141 743 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 51 740 IPR042160 -
Spst4g03141 743 ProSitePatterns 'Homeobox' domain signature. 88 111 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03141 Spst-Chr4 70847251 70852055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03141 1 740 Homeobox Transcription Factor Family AT3G61150 54.724 0.0 811
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Spst4g03141 START 1.8e-45 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03141 K09338 - gmx:100820113 1259.2