Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03115 ATGGATGGTGATAAGAGATTTAATATCAGTGTTTTGGTTGTGGATGATGATGATGCTTCTTTAACAATACTTGCTGATATACTCAATACATTGGGATATCAAGTTCTCGCTGCCAATAACGCCGTTAATGCTTTGGAGAGTCTTCGAGAGTTTGAAGGCTTTGTTGATCTGGTTATTACAGAATTTAATATATCAGGAATGAATGGATTTGACTTTCAAAAGTTTATTCAAAATGAATTCCATATACCAGTGATAAATAGAAGAGAGAGTGTGATATCCAGTAGTTTAGCAAACGGAGCAACACGCTATATTCTGAAACCCTTTTGCGCAGATGACTTTAGAGATATTTGGCAGTATGCTATGGCTTCAAGGAAAAGGAAACTAACTATTGGACATATTGAAGGAGAGTCACTACCAAGTGACAACATTTTTATACAAGATGTTTACTCTGCAACTTCATCGAATTTGAATGAGAGAAAAACGAAGTATTGTCCAAGAAAGAGTACCCAAATGAATGAGGAAGGCCAAAGTGAAGAAAGACCTCAGCTTGTAAAGAAACCAAAGGTTGTTTGGACAACATACCTACACAACCTCTTTCTGCTTGCTATAAAACAAATTGGATTGGAGATTGAAATGTCAAGACATGAGAAAAAGAAGAGTTCCTGTAAATCTACACTCCATTTTGGGGTGTTGGTTGGGGCCGTGCCAAAGGCGATTCTTGATGTGATGAATGTGCCAAACTTGACTAGAGAAAATGTTGCTAGTCACTTACAGAAGTATCGCATATTCCTGAGGAAAGTAGCAGATAAAGGGTTTCTTGAGGGCTTATCTAACAGGGATCTGAGGTCAAGGTTTGCTTTTGGCCTTTCAGCATCATTGGTTAGAGACTTCCAAGCAAGAACTTCCAAATTGCGTGTTCCTGTGCAACAATATATGAAAAGAATAACACATCAAACAGGGTATAAAGGAATAGCCAATGCTGTTAAGCCTTACCATGTTTCAAGTACTAATTATGTGGCTGGTTCTCCACTGGGAAGATGTCATCAATTTTCCCATCCAAGGAACCAGTATGGTAATTCTTTGAATCAAGCAAGAGTTGGAGTAGAATCAAGCTTTGGAAGTAATGATTGGGTCAATAATATCCAGCAAAACCTTTTGGGAAGCTATGGAAACCAACCATATTATGCAATTAACTCTTACAACAACAATGCTGGTGTTGTCTTTCCATCCGATGGAATAATGGCACATGGCTGGATGTCTTCTGCAAATGGCCTAAGGGGAGGTGTGAAATATGATGACCATCAATTGATGTCTCCAAACTATGATTCATTGGTACATTATCATCAGAAATATACCTATGATCAAAGAAATTGGAACATGGGATCTTGGCATGACTCTTGTAATAATCTATCTTTGACTTCTAGTTCAACTTACAATCCCAACAAAAACATTCAATTGAATGGTGGATCACAAATGATTGGAAATGGAATGAAAAGAGGGTTTAACAGTATTGTTGGTATTATGGATTCTACTGCAAATAACAACTTTGGCTTGATCAATGCCACCACACAAAATACAAATAGGAATGTGGCACCCTTGGGCCAAGGAAACTTTGGTTTCGCTCAAAGAGGGTTTACTTCTACTTCTGCTTCTAGTAACGGGGAGGACAGGTCAAGTGAACTTCCAGCGGCATTGATCACCAATAATGGAAGTAGAGCAGAAAATATTTCAGGGAACCTACAACTGCCACAACAAGTACATGAAAGTGTTGCAGAAAATGACAATGCTACTCCAATCAGTGAGCTGAACATTTGTCACCTGGAAGAAGACGGCCTTTCTGATCTTTTCATGATACTAGATGAAATGAATCTTCTTAACGAGTCTAACAGCAGTGCTAGTAGTGACAAGAATGTGAACCCAACTGAAGCCACAATAAACCTGTCAAACGAGTTCCCAACAAGCTCTGACAAGAACTCCAATAAGATGGAAGGTGATGATGGATTTGTTGACTTAGAAGATTTGGACAAGTTCATGATGGACAATGTTTCCTCAGCAAGTAACTCAGTTACTGATCAGGTTTGGGATATAGAAGTTATTAAAGCCTTGTTTGATGAGGAGACAAACTAG 2127 0.385 MDGDKRFNISVLVVDDDDASLTILADILNTLGYQVLAANNAVNALESLREFEGFVDLVITEFNISGMNGFDFQKFIQNEFHIPVINRRESVISSSLANGATRYILKPFCADDFRDIWQYAMASRKRKLTIGHIEGESLPSDNIFIQDVYSATSSNLNERKTKYCPRKSTQMNEEGQSEERPQLVKKPKVVWTTYLHNLFLLAIKQIGLEIEMSRHEKKKSSCKSTLHFGVLVGAVPKAILDVMNVPNLTRENVASHLQKYRIFLRKVADKGFLEGLSNRDLRSRFAFGLSASLVRDFQARTSKLRVPVQQYMKRITHQTGYKGIANAVKPYHVSSTNYVAGSPLGRCHQFSHPRNQYGNSLNQARVGVESSFGSNDWVNNIQQNLLGSYGNQPYYAINSYNNNAGVVFPSDGIMAHGWMSSANGLRGGVKYDDHQLMSPNYDSLVHYHQKYTYDQRNWNMGSWHDSCNNLSLTSSSTYNPNKNIQLNGGSQMIGNGMKRGFNSIVGIMDSTANNNFGLINATTQNTNRNVAPLGQGNFGFAQRGFTSTSASSNGEDRSSELPAALITNNGSRAENISGNLQLPQQVHESVAENDNATPISELNICHLEEDGLSDLFMILDEMNLLNESNSSASSDKNVNPTEATINLSNEFPTSSDKNSNKMEGDDGFVDLEDLDKFMMDNVSSASNSVTDQVWDIEVIKALFDEETN 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03115 708 SUPERFAMILY CheY-like 9 124 IPR011006 -
Spst4g03115 708 NCBIfam myb-like DNA-binding domain, SHAQKYF class 227 262 IPR006447 GO:0003677
Spst4g03115 708 PANTHER TWO-COMPONENT RESPONSE REGULATOR 10 385 IPR045279 GO:0009736
Spst4g03115 708 Gene3D - 183 268 - -
Spst4g03115 708 Pfam Response regulator receiver domain 11 115 IPR001789 GO:0000160
Spst4g03115 708 SMART REC_2 9 117 IPR001789 GO:0000160
Spst4g03115 708 ProSiteProfiles Response regulatory domain profile. 10 121 IPR001789 GO:0000160
Spst4g03115 708 SUPERFAMILY Homeodomain-like 184 266 IPR009057 -
Spst4g03115 708 Gene3D - 2 130 - -
Spst4g03115 708 CDD REC_typeB_ARR-like 11 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03115 Spst-Chr4 70547611 70551748 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03115 9 285 Response Regulator Gene Family AT5G07210 33.333 4.65e-38 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Spst4g03115 Response_reg 2.7e-14 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03115 - K14491 gmx:102663776 667.537