Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03114 ATGATCACCTTCAACCACTCTTCTCAATTGTACCATGTTTCCCCTGAGCTCAACTCTTCTTTCGATTCCTCATCTCCACCCTCGGAGACCTCTCGCGGTGTGGCATTCTCCGACGAGGAGGTTCGGTTGGCTGTGAGGCATCCGAAGAAGAGGGCGGGGCGGAAGAAGTTCCGGGAGACACGCCACCCTGTGTACCGGGGAGTGAGGATGAGAAACTCGGACAAATGGGTGTGTGAGGTGAGGGAGCCAAACAAAAAAAGCAGGATTTGGCTAGGAACTTTTCCCACCCCGGAGATGGCGGCGCGGGCTCATGATGTGGCGGCGATGGCTCTCAGAGGCCGGTATGCCTGTCTCAACTTCGCTGACTCAAGGTGGCGGTTACCGGCCCCTGCCAGCGCCAGCGCCAAAGATATACAAAAGGCAGCAGCAGAAGCTGCAGAAGCTTTCAGACCAAACCAAACTTTAGAAAACACTAACAGAGGGCAAGAGTGTGTGGAGGCGATGACAACAACAGTGGAACAAGGTGTGTTTTATATGGAGGGAGATCAGGAAGTGTTGGATATGCCTGAGTTGCTTAGGAATATGGTGCTCATGTCCCCATCACATTGCTTAGGGTATGAGTATGAAGATGCTGACTTGGATGCTCAAGATCCTGAGGTGTCACTATGGAGTTTCTCAATCTAA 684 0.5234 MITFNHSSQLYHVSPELNSSFDSSSPPSETSRGVAFSDEEVRLAVRHPKKRAGRKKFRETRHPVYRGVRMRNSDKWVCEVREPNKKSRIWLGTFPTPEMAARAHDVAAMALRGRYACLNFADSRWRLPAPASASAKDIQKAAAEAAEAFRPNQTLENTNRGQECVEAMTTTVEQGVFYMEGDQEVLDMPELLRNMVLMSPSHCLGYEYEDADLDAQDPEVSLWSFSI 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03114 227 Gene3D AP2/ERF domain 64 122 IPR036955 GO:0003700|GO:0006355
Spst4g03114 227 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Spst4g03114 227 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
Spst4g03114 227 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Spst4g03114 227 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Spst4g03114 227 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
Spst4g03114 227 MobiDBLite consensus disorder prediction 16 36 - -
Spst4g03114 227 MobiDBLite consensus disorder prediction 16 32 - -
Spst4g03114 227 FunFam Ethylene-responsive transcription factor 2 63 122 - -
Spst4g03114 227 CDD AP2 65 123 IPR001471 GO:0003700|GO:0006355
Spst4g03114 227 SUPERFAMILY DNA-binding domain 64 123 IPR016177 GO:0003677
Spst4g03114 227 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 22 224 IPR045277 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03114 Spst-Chr4 70542464 70543147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03114 42 225 AP2-EREBP Transcription Factor Family AT5G51990 58.163 2.26e-67 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst4g03114 AP2 1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03114 - - gmx:547622 359.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g03114 4 70542464 70543147 Spst10g01020 10 10879693 10880310 ECH
Spst4g03114 4 70542464 70543147 Spst4g03114 4 70542464 70543147 ECH
Spst4g03114 4 70542464 70543147 Spst10g01020 10 10879693 10880310 PCT