Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03112 ATGGCTTCTGCTACACTCTCACTCCATTACCCTCTTCTTCTTCGTTCTCCTCTGTCTACCAAAATTATGAAACCACCCCTCTCTCTTCCCCTCTCACCCCTTCTCGTTCACCCTCTCCACTCGCGCTTTCTCCTCCCTCCGCCACGCGCCTACGTAACTGCGCCCGCATCCGACCCGAATTTCGGCGACCCGGATCCGAAACTTATCGGGTTGGGTTCGGAGAACGCGAAGCCGCGAAACGTTATCTCTTGGAGCCTCCTCTTCACGCTTCTCATGAAGCACAAACTGCGTCTGGCTCTCGTGGTCACAACACTCTTCGCCTGCTCCACATGTACCCTATCCATGCCTATCTTTTCCGGACGGTTTTTTGAAGTTCTAATTGGCGCTAGACCTGAGCCGTTGTGGAAGCTGCTTAGTAAAATTGTTGTTCTGTATGCTTTGGAGCCACTTTTAACTATAATTTTTGTTATAAACATGAACATAGTGTGGGAGAAAATTATGTCAACACTAAGAGCTCAGATCTTCGGAAGAATATTAATACAAAAGATTGAATTTTTTGACAAATACAAGGTTGGTGAACTCACAGGTTTGTTAACATCTGATTTGGATTCTCTTAAAAATATTGTCAGTGAGAATGTCTCAAGGGATCGCGGATTCAGGGCATTATCTGAGGCAAGCAACTTTACACCAATGAGTGAAATTTTTGCCACAAATTCTGTTTGGGTCGTTGGAACAATATTCATTCTTTTTTCCTTATCACCGCAACTGGCACCCATTTTAGGTGTTTTGATGCTCGCAGTTTCCATTTCAATTGCTGTCTACAAGAGATCTACATTGCCAGTTTTTAAAGCACATGGGAAGGCCCAAGCATCTATATCTGATTGTGTATCAGAAACATTTTCAGCTATTCGAACAGTCAGATCCTTTGGTGGTGAAAAGCGCCAAATGTTTTCTTTTGCTAATCAGGTTCTATCTTTCCAATCCAGTGGGATAAAGCTTGGGACTTTCAAATCTGTAAATGAATCCTTGACTAGAGTTGCTGTTTATATTTCTTTAATAGCATTGTATTGTCTTGGAGGAAGCAAGGTTAAGGCGGGTGAGCTGTCTGTTGGAACCATGGCATCTTTTATTGGATATACTTTCACTTTAACATTCGCTGTTCAAGGACTGGTTAATACTTTTGGAGACCTTCGTGGAAGTTTTGCTGCTGTTGAGAGGATCAACTCTGTTTTATCTGGAGTTCAAGTGGATGATGCCCTGGCTTATGGCTTAGAAAGAGAACTGAGACAAAAAATAGTTGATGATGAAAACTATAAATTGGTCTTATCTAATATTTCTAATGAGAATATCCAAAAAAATTATTTTCACTACATGTCAGCTCTTAAAACATCAAGCAATTTGTTTAGCTTAGCTTGGTCCGGAGATATTTGTCTTGAAGATGTATATTTCTCTTATCCATTAAGGCCAGATGTCGAAATCTTACGTGGCTTAAATTTAAGACTAAAATGTGGAACTGTAACTGCACTGGTGGGTTCTAGTGGTGCAGGCAAAAGTACTGTAGTCCAGCTATTGTCTCGTTTTTATGAGCCAACAAGTGGTTGTATAACAGTTGCTGGAGAGGATGTCCGAACATTTGACAAGAGTGAATGGGCCCGGGTTGTCTCTATGGTAAATCAAGAGCCTGTTCTGTTTTCGGTGTCTGTTGGAGAAAACATTGCATATGGGCTTCCAGATGAAGATGTTTCTAGAGAAGATGTGATTAAGGCAGCAAAAGCTGCAAATGCTCATGACTTTATAATTTCACTTCCACAGGGCTACGATACACTCGTTGGTGAACGTGGAGGCTTATTGAGTGGAGGACAGAGACAGAGAATTGCTATTGCTCGAGCTCTCCTAAAGAATGCTCCCATCCTTATACTTGATGAGGCTACCAGTGCCCTGGATGCTGTCAGTGAGCGCTTGGTCCAGGATGCTCTGAACCATTTGATGAAGGGAAGGACCACATTAGTAATAGCTCACCGATTAAGCACAGTGCAAAATGCATATCAAATTGCAGTCTGTTCCGAGGGGAGGATTGTAGAATTAGGAACCCATTTTGAGCTATTGGCTAAGAAAGGCCAGTATGCTTCACTGGTTGGCACACAAAGGCTTGCCTTTGAATAA 2163 0.423 MASATLSLHYPLLLRSPLSTKIMKPPLSLPLSPLLVHPLHSRFLLPPPRAYVTAPASDPNFGDPDPKLIGLGSENAKPRNVISWSLLFTLLMKHKLRLALVVTTLFACSTCTLSMPIFSGRFFEVLIGARPEPLWKLLSKIVVLYALEPLLTIIFVINMNIVWEKIMSTLRAQIFGRILIQKIEFFDKYKVGELTGLLTSDLDSLKNIVSENVSRDRGFRALSEASNFTPMSEIFATNSVWVVGTIFILFSLSPQLAPILGVLMLAVSISIAVYKRSTLPVFKAHGKAQASISDCVSETFSAIRTVRSFGGEKRQMFSFANQVLSFQSSGIKLGTFKSVNESLTRVAVYISLIALYCLGGSKVKAGELSVGTMASFIGYTFTLTFAVQGLVNTFGDLRGSFAAVERINSVLSGVQVDDALAYGLERELRQKIVDDENYKLVLSNISNENIQKNYFHYMSALKTSSNLFSLAWSGDICLEDVYFSYPLRPDVEILRGLNLRLKCGTVTALVGSSGAGKSTVVQLLSRFYEPTSGCITVAGEDVRTFDKSEWARVVSMVNQEPVLFSVSVGENIAYGLPDEDVSREDVIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAYQIAVCSEGRIVELGTHFELLAKKGQYASLVGTQRLAFE 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03112 720 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 99 399 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g03112 720 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 468 715 IPR027417 -
Spst4g03112 720 Pfam ABC transporter 494 645 IPR003439 GO:0005524
Spst4g03112 720 CDD ABC_MTABC3_MDL1_MDL2 476 715 - -
Spst4g03112 720 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 476 714 IPR003439 GO:0005524
Spst4g03112 720 SUPERFAMILY ABC transporter transmembrane region 87 407 IPR036640 GO:0005524|GO:0016020
Spst4g03112 720 Gene3D - 474 717 IPR027417 -
Spst4g03112 720 Pfam ABC transporter transmembrane region 234 386 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g03112 720 Pfam ABC transporter transmembrane region 100 213 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g03112 720 SMART AAA_5 503 677 IPR003593 GO:0016887
Spst4g03112 720 Gene3D ABC transporter type 1, transmembrane domain 81 415 IPR036640 GO:0005524|GO:0016020
Spst4g03112 720 ProSitePatterns ABC transporters family signature. 617 631 IPR017871 GO:0005524|GO:0016887
Spst4g03112 720 FunFam ATP-binding cassette sub-family B member 8, mitochondrial 474 718 - -
Spst4g03112 720 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 67 718 IPR039421 -
Spst4g03112 720 CDD ABC_6TM_TAP_ABCB8_10_like 105 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03112 Spst-Chr4 70525444 70533195 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03112 473 720 Calmodulin-binding Proteins AT2G36910 55.378 2.40e-75 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03112 K05657 - gmx:100791034 1213.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g03112 4 70525444 70533195 Spst4g03112 4 70525444 70533195 ECH