Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03108 ATGGACGTGGACGGGGGCAACAAGCGTGTGTACAATCGTCTCGGTGGGGACGCGAAGCACCAGAAAGTGTGCTTCCACTGGCAAGCGGGCAAGTGCAATCGTTACCCGTGCCCCTTCTTGCACAGTGAATTGCCCGCATCTTCTCATGCCAACGGGGCCTCCTCGAAGCGCGCGTACGACAATTCGGGCCAATCGGGCTTCTCGGGCCAGCGTGGCCGCCACAATTTCACAAACACGTGGGGACGCGGTGGGGGGCGCGGTGGCGGTAGAGGGGTGGTGGTCAAGGCGGAAAAAGTTTGCAATTATTGGATTCAGGGGAATTGTAGTTATGGAGAGAGGTGTAAGTTCCTTCACTCTTGGAGTGTGGGAGATGGGTTTTCTTTGCTGACGCAGCTTGAAGGGCATCAGAAGAAATGTGGTTTAGCTGTGGTGACTTTAGACCTTGTTGCTGGGGATGAAATTGCCGTTTTTCATGGGATAGGTTTTGATTTGTTGAATGAACAGGCTGTAAGTGCAATTGCCTTTCCCTCTGGTTCGGATAAGCTGTATACCGGAAGCACTGACGAGACTGCAAGGATTTGGGACTGCCAGTCTGGAAAGTGTGTAGGTGTGATCAATCTTGGTGGTGAAGTAGGATGTATGATCAGTGAAGGCCCTTGGGTTTTTGTTGGGATACCCAATTTTGTCAAGGCCTGGAACACTCAAAATTTAATGGAGCTAAGTCTAGATGGTCCTGTTGGACAAGTTTATGCCCTTGTTGTGAACAATGATATGCTCTTGGCCGGTACACAGGATGGATCGATATTAGCATGGAAGTTTAATGTAGCTACCAACTGCTTCGAACCTGCTGCATCACTTAAAGGTCATTCTCGTGGTGTTGTTTCATTAGTTGTTGGTGCTAATAGACTTTACTCTGGGTCAATGGACAATACAATAAGAGTATGGAACCTTGAAACCTTGCAGTGTATACAGACACTAACAGAGCACACATCTGTTGTGATGTCAGTTCTCTGCTGGGACCAATTCCTTTTATCTTGTTCCTTGGACAAAACCGTGAAGGTATGGTATGCTACAGAAAGCGGAAACTTGGAAGTGACGTATACTCACAATGAAGAACATGGTATACTTTTCCTATGTGGGATGCATGATTCACAAGGCAAGCCCATTGTGCTGTGTGCTTGCAATGATAATACCGTGCGCCTCTATGATCTGCCATCATTTGCAGAGAGGGGTAAGATATTAACTAAACAAGAGGTACGAGCAATCCAGATAGGGCCTAACGGCATATTCTTCACCGGAGATGGTACCGGTGAAGTAAGAGTGTGGAATTGGACAGCGGAGGCAACCACTACCCTGCAAGAAGGGATTAAGGCTGAAGTTGGGAAGAGGCAGAAAAAGAGAGGTAAAGGGAGTGTATGTAATTTAAGTTTGCGGAAGTAG 1440 0.4771 MDVDGGNKRVYNRLGGDAKHQKVCFHWQAGKCNRYPCPFLHSELPASSHANGASSKRAYDNSGQSGFSGQRGRHNFTNTWGRGGGRGGGRGVVVKAEKVCNYWIQGNCSYGERCKFLHSWSVGDGFSLLTQLEGHQKKCGLAVVTLDLVAGDEIAVFHGIGFDLLNEQAVSAIAFPSGSDKLYTGSTDETARIWDCQSGKCVGVINLGGEVGCMISEGPWVFVGIPNFVKAWNTQNLMELSLDGPVGQVYALVVNNDMLLAGTQDGSILAWKFNVATNCFEPAASLKGHSRGVVSLVVGANRLYSGSMDNTIRVWNLETLQCIQTLTEHTSVVMSVLCWDQFLLSCSLDKTVKVWYATESGNLEVTYTHNEEHGILFLCGMHDSQGKPIVLCACNDNTVRLYDLPSFAERGKILTKQEVRAIQIGPNGIFFTGDGTGEVRVWNWTAEATTTLQEGIKAEVGKRQKKRGKGSVCNLSLRK 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03108 479 SMART c3hfinal6 96 120 IPR000571 GO:0046872
Spst4g03108 479 SMART c3hfinal6 20 43 IPR000571 GO:0046872
Spst4g03108 479 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 286 319 - -
Spst4g03108 479 ProSiteProfiles Zinc finger C3H1-type profile. 95 121 IPR000571 GO:0046872
Spst4g03108 479 SUPERFAMILY CCCH zinc finger 96 119 IPR036855 GO:0046872
Spst4g03108 479 PRINTS G protein beta WD-40 repeat signature 182 196 IPR020472 -
Spst4g03108 479 PRINTS G protein beta WD-40 repeat signature 343 357 IPR020472 -
Spst4g03108 479 PRINTS G protein beta WD-40 repeat signature 303 317 IPR020472 -
Spst4g03108 479 Gene3D - 16 117 - -
Spst4g03108 479 PANTHER - 96 448 IPR044715 -
Spst4g03108 479 Gene3D - 118 301 IPR015943 GO:0005515
Spst4g03108 479 Gene3D - 302 461 IPR015943 GO:0005515
Spst4g03108 479 ProSitePatterns Trp-Asp (WD) repeats signature. 303 317 IPR019775 -
Spst4g03108 479 SMART WD40_4 360 403 IPR001680 GO:0005515
Spst4g03108 479 SMART WD40_4 233 272 IPR001680 GO:0005515
Spst4g03108 479 SMART WD40_4 406 443 IPR001680 GO:0005515
Spst4g03108 479 SMART WD40_4 319 356 IPR001680 GO:0005515
Spst4g03108 479 SMART WD40_4 279 316 IPR001680 GO:0005515
Spst4g03108 479 SMART WD40_4 150 195 IPR001680 GO:0005515
Spst4g03108 479 Pfam Zinc finger domain 100 118 - -
Spst4g03108 479 MobiDBLite consensus disorder prediction 51 77 - -
Spst4g03108 479 ProSiteProfiles Zinc finger C3H1-type profile. 18 44 IPR000571 GO:0046872
Spst4g03108 479 Pfam WD domain, G-beta repeat 321 355 IPR001680 GO:0005515
Spst4g03108 479 Pfam WD domain, G-beta repeat 283 316 IPR001680 GO:0005515
Spst4g03108 479 Pfam WD domain, G-beta repeat 169 195 IPR001680 GO:0005515
Spst4g03108 479 ProSiteProfiles Trp-Asp (WD) repeats profile. 286 325 IPR001680 GO:0005515
Spst4g03108 479 MobiDBLite consensus disorder prediction 51 87 - -
Spst4g03108 479 FunFam Zinc finger CCCH domain-containing protein 48 243 451 - -
Spst4g03108 479 ProSiteProfiles Trp-Asp (WD) repeats profile. 166 204 IPR001680 GO:0005515
Spst4g03108 479 SUPERFAMILY WD40 repeat-like 167 446 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03108 Spst-Chr4 70486316 70499450 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03108 258 443 Miscellaneous Gene Families AT5G08390 26.020 2.20e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Spst4g03108 WD40 0.0028 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03108 - - gmx:100775542 790.801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g03108 4 70486316 70499450 Spst4g03108 4 70486316 70499450 ECH