Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03105 ATGGGTAAGGGGGGAATGTCAATTGATGATCATGGAGAAGGCAAGGAAGAGAATATGGCTGCTTGGCTTCTTGGTATAAACACACTCAAGATTCAACCTTTCAAGCTTCCTACTCTAGGACCCCATGATGTCAGAGTTAGAATGAAGGCTGTTGGTATCTGTGGGAGTGATGTACACTACCTCAAGACACTGAGGTGTGCGCACTTTATAGTTAAGGAACCAATGGTTATTGGTCATGAGTGTGCTGGGATCATAGAAGAAGTTGGTAGTCAGGTAAAGAGTTTGGTGCCTGGTGATCGTGTGGCGATTGAACCTGGGATCAGTTGCTGGCGATGCGGCCATTGCAAGCAGGGTCGATATAATTTATGTGATGATATGAAGTTTTTTGCTACTCCACCGGTTCATGGTTCCCTGGCTAATCAGATAGTGCATCCTGCAGACCTGTGTTTTAAGCTGCCAGACAACGTGAGCCTAGAGGAGGGGGCCATGTGCGAACCCTTAAGTGTTGGTGTTCATGCTTGTAGGAGAGCAAATATTGGACCAGAAACAAATGTGTTGATCATGGGAGCTGGACCCATAGGACTTGTTACAATGCTTGCAGCTCGTGCTTTTGGAGCACCCAGGACTGTCATCGTGGATGTGGATGACCATCGTTTATCTGTTGCAAAATCTCTTGGTGTAGATGATATTGTTAAAGTCTCAACAAACATTCAGGATGTGAATGAAGAAGTTGAGAAGATACAAAAAGTTATGGGAGCTGGTATAAATGTTACCTTTGATTGTGCTGGTTTTGACAAAACCATGTCTACAGCACTGGGTGCTACTCAGCCAGGTGGTAAAGTTTGCCTGGTGGGGATGGGACATTCTGAAATGACTGTCCCACTCACCCCTGCGGCAGCAAGGGAAGTTGATGTGGTTGGAGTTTTTCGCTATATGAACACATGGCCTCTTTGCCTTGAGTTTCTAAGGAGTGGCAAAATCGATGTAAAACCCCTTATAACTCACAGGTTTGGATTCTCTCAGAAGGAAGTGGAAGAAGCCTTTGAAACAAGTGCTCGTGGTGGTAATGCCATCAAGGTCATGTTCAATCTTTAG 1095 0.453 MGKGGMSIDDHGEGKEENMAAWLLGINTLKIQPFKLPTLGPHDVRVRMKAVGICGSDVHYLKTLRCAHFIVKEPMVIGHECAGIIEEVGSQVKSLVPGDRVAIEPGISCWRCGHCKQGRYNLCDDMKFFATPPVHGSLANQIVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGAGPIGLVTMLAARAFGAPRTVIVDVDDHRLSVAKSLGVDDIVKVSTNIQDVNEEVEKIQKVMGAGINVTFDCAGFDKTMSTALGATQPGGKVCLVGMGHSEMTVPLTPAAAREVDVVGVFRYMNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGNAIKVMFNL 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03105 364 SMART PKS_ER_names_mod 25 362 IPR020843 GO:0016491
Spst4g03105 364 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 78 92 IPR002328 GO:0008270|GO:0016491
Spst4g03105 364 FunFam Sorbitol dehydrogenase 169 309 - -
Spst4g03105 364 Pfam Alcohol dehydrogenase GroES-like domain 41 152 IPR013154 -
Spst4g03105 364 Coils Coil 230 250 - -
Spst4g03105 364 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 155 328 IPR036291 -
Spst4g03105 364 SUPERFAMILY GroES-like 18 190 IPR011032 -
Spst4g03105 364 PANTHER SORBITOL DEHYDROGENASE 17 364 - -
Spst4g03105 364 CDD sorbitol_DH 20 363 IPR045306 GO:0016616
Spst4g03105 364 Gene3D - 29 350 - -
Spst4g03105 364 Pfam Zinc-binding dehydrogenase 192 322 IPR013149 -
Spst4g03105 364 Gene3D - 169 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03105 Spst-Chr4 70452908 70456972 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03105 31 297 Monolignol Biosynthesis Gene Families AT4G37980 26.259 8.36e-16 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03105 K00008 - gmx:100820630 719.153