Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03097 ATGGGAAGAGGAAGGGTAGTTCTGGAGAGAATAGAGAACAAGATCAATCGTCAAGTAACGTTCTCGAAGCGCAGAAGTGGGTTGCTTAAGAAGGCCTTCGAGCTTTCTGTGCTCTGTGATGCAGAAGTTGCCCTTATCATCTTTTCTAGCCGTGGCAAGCTTTTTCAGTACAGCAGCACTGAAATTAACAAAATCATTGAGAGGTATCGCCAATGTCGTTACAGCAAGTCACAGACTGGTGATTCATCGGAACTCGATTCACAGAGTTCATATCATGAATTCTTGAAATTAAGAGCGAAATACGAATCTCTAGAAAGGACACAAAGGCATTTTCAAGGAGAAGATCTTGAGCCACTAAGCTTTAAAGAATTGCAGAGCCTTGAAAAACAACTAGACATTACACTCGCACTAACTCGACAGCAACAAACAAAGAAACTCATTGCACGAGCTGATGAATTACGCGAAAAGGTGCACAAATTGGAAGATCTTAACAAACAATTGGAGTCCAAGGAAAAAGATTATTTTTCAAGCCTCATCCTTGATAATAACAATATTTTTCAACTGCATGCTACACAAGCCGATCAATTTGAATCCGGAACAACACTAAACACATGGTTTCAAGACCAAGAAGTTGGGAAAGAAAAAGGAAGTGATACGAGGACAGAGGGTAACCAAGGCTGTCACCACAAAAGCAATGGATGGTTGTAG 708 0.4082 MGRGRVVLERIENKINRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSSRGKLFQYSSTEINKIIERYRQCRYSKSQTGDSSELDSQSSYHEFLKLRAKYESLERTQRHFQGEDLEPLSFKELQSLEKQLDITLALTRQQQTKKLIARADELREKVHKLEDLNKQLESKEKDYFSSLILDNNNIFQLHATQADQFESGTTLNTWFQDQEVGKEKGSDTRTEGNQGCHHKSNGWL 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03097 235 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Spst4g03097 235 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Spst4g03097 235 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Spst4g03097 235 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Spst4g03097 235 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Spst4g03097 235 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Spst4g03097 235 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 177 - -
Spst4g03097 235 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Spst4g03097 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Spst4g03097 235 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Spst4g03097 235 Coils Coil 143 173 - -
Spst4g03097 235 Pfam K-box region 85 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Spst4g03097 235 MobiDBLite consensus disorder prediction 210 235 - -
Spst4g03097 235 MobiDBLite consensus disorder prediction 211 225 - -
Spst4g03097 235 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Spst4g03097 235 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Spst4g03097 235 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03097 Spst-Chr4 70340390 70344555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03097 1 170 MADS-box Gene Family AT2G45650 58.235 5.37e-61 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Spst4g03097 K-box 2.5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03097 K09264 - gmx:100793681 394.815