Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03085 ATGAGAAAGGCTAGCAAGCACCACAAGGTTGTGGAGGAGAAAGAAGATTATAAGCTCGCCATGGATGAAAACAAGAAGTGGATGCATAAGGAAACTGAAAGACAAAGAAGGCAAGAGATGGGAAAACTCTGCACCAACCTTAGATCGCTTCTGCCTTTAGAATATATTAAGGGAAAGCGTTCAACCTCAGATCATGTGCATGAGGCTATAAATTATATCAACCACCTAGAAAATAAGGTGAAGCAATTGCAAGCAAAGAGGGATGAGTTATTGAAGGAGTCAAATTTGAGTAGAATTGATCCTGATGAGAATGAAAACTGTAGAGCTACTCATCTTCCACCCTTGGTTTTTGTTCATCCTTTCCTGGGAGGCCTTGAGATTATGTGCAGCTATAGCTTGAGGAAAAGTGTGTTCCCCATGTCAAGATTATTGGACATTCTGCATAAAGAAGGACTTAACGTGGTTAGCACTACTTCCATCAGAAGAGATGGTAGATTCATACACACCATTCAATCAGAGATTGCAAAAAAGAAGAAGCTGCAGCCTGTGACTCAACATGTGGTTTTGTCTAACCAAGATGAGTAG 585 0.4068 MRKASKHHKVVEEKEDYKLAMDENKKWMHKETERQRRQEMGKLCTNLRSLLPLEYIKGKRSTSDHVHEAINYINHLENKVKQLQAKRDELLKESNLSRIDPDENENCRATHLPPLVFVHPFLGGLEIMCSYSLRKSVFPMSRLLDILHKEGLNVVSTTSIRRDGRFIHTIQSEIAKKKKLQPVTQHVVLSNQDE 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03085 194 CDD bHLH_AtORG2_like 25 98 - -
Spst4g03085 194 Pfam Helix-loop-helix DNA-binding domain 26 77 IPR011598 GO:0046983
Spst4g03085 194 Coils Coil 66 93 - -
Spst4g03085 194 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 22 173 - -
Spst4g03085 194 SMART finulus 30 82 IPR011598 GO:0046983
Spst4g03085 194 FunFam Transcription factor bHLH126 16 104 - -
Spst4g03085 194 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 24 76 IPR011598 GO:0046983
Spst4g03085 194 Gene3D - 16 106 IPR036638 GO:0046983
Spst4g03085 194 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 23 95 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03085 Spst-Chr4 70216582 70218890 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03085 29 174 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 42.000 5.76e-35 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst4g03085 HLH 8.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03085 - - ccaj:109791323 281.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g03085 4 70216582 70218890 Spst4g03085 4 70216582 70218890 ECH
Spst4g03085 4 70216582 70218890 Spst10g01045 10 11182746 11183857 PCT