Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03084 ATGTTTCCTTTACAACGAGGCAATGAGCTGGTTATTGAGTTTTCTAATAGCCCCCACCAGCAGCAACACAAGATCTCCCAAGATCTGATTCTGGATGATTATGCTTCTCTGGATGTCAATGTTTCTGACAAAAATTTCCCCAGAAGCCAACCAAAGAATCTTTTCTATGAGGCAAATAAAAAGAATCATGACTCTAACGAACATAAGAAGAAGATGATTCACAAGGAGATTGAAAGGCAAAGGAGACAAGAAATGGCTACCTGCTATGCCTCTCTTAGATCCCTTCTCCCTCTTGAGTTCATCAAGGGAAAGCGTTCAATATCTGACCACATGAACGAGGCAGTGAATTACATAAAGCACATGCAGAACAATATCAAAGAGCTTGGTGCCAAGAGAGATGAACTGAAGAAATTCAATAACCGCAATTTCGAAAATAGCCACGAGGACTTGCATACATCTTGCAGCTTCACTGTCCACGAGAATAATGGTGTTATAGGAATTGAAATCACCGGTGGCTTGAGAGAGGAAAAGCCTAAAGTTTCAAAGTTACTACAATTCCTGACTCAAGAAGGTCTTGAAGTTGTTAGTTACCTTTCATCAGAAGTCAACGGTAGATTGCTCCACAGTGTGCAGTGTGAGGTTAACAATTCCTACACTGTAGATCTATATCAGCTGAGAAATAAAGTTTCCAAAGCATTTCCAGCATTTAGATGTTCTGATAAACTTTATGGTTGA 735 0.3986 MFPLQRGNELVIEFSNSPHQQQHKISQDLILDDYASLDVNVSDKNFPRSQPKNLFYEANKKNHDSNEHKKKMIHKEIERQRRQEMATCYASLRSLLPLEFIKGKRSISDHMNEAVNYIKHMQNNIKELGAKRDELKKFNNRNFENSHEDLHTSCSFTVHENNGVIGIEITGGLREEKPKVSKLLQFLTQEGLEVVSYLSSEVNGRLLHSVQCEVNNSYTVDLYQLRNKVSKAFPAFRCSDKLYG 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03084 244 SMART finulus 75 127 IPR011598 GO:0046983
Spst4g03084 244 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 69 121 IPR011598 GO:0046983
Spst4g03084 244 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 60 230 - -
Spst4g03084 244 Coils Coil 118 138 - -
Spst4g03084 244 CDD bHLH_AtORG2_like 70 146 - -
Spst4g03084 244 FunFam Transcription factor bHLH126 61 149 - -
Spst4g03084 244 Pfam Helix-loop-helix DNA-binding domain 70 122 IPR011598 GO:0046983
Spst4g03084 244 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 68 138 IPR036638 GO:0046983
Spst4g03084 244 Gene3D - 60 155 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03084 Spst-Chr4 70186198 70187314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03084 67 214 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25400 48.649 1.66e-40 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst4g03084 HLH 4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03084 - - gmx:100780888 379.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g03084 4 70186198 70187314 Spst4g03084 4 70186198 70187314 ECH
Spst4g03084 4 70186198 70187314 Spst10g01047 10 11229695 11230646 PCT