Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03066 ATGACGACGGCGACTCTCGGCCCCAAGAAGCGGCGGGCGGTTGGGCTCTGGTGCTGCGTTGTGTGCCTCGCGATCTGCGCTAGGGTTTGCGGCGCGGCTAGATCCGACCAGGAAACGCGCGAAAGGTTCTACGGAAACATAGTCAATTTGACGTCGCCGGAATCCAACAACACATTGGCCAAGATGTTCGATCGCGTTCTCGAGAAGGAGTTTTCCGAGAATGACCAACCAGAAGGATCTGACAAAAGCAGCTTCAATAGCAGTGTCGCTGATCAGCAGGCTGTATTGGAGACTGTAGCTAAAATTACTCATGAGAAAGCAAAGAGAAATGATACACATGAGGGAAAGTATGGTCATATATTGCCCAATGTAGTTTCTCACGGAACAAGAGCATTTCAGTTTCAAGATGTGTTCTCTCTGGAAAATGAAGATTCCGATGATGTGACAACTTTGATTGATAAAAAGGACAATGTCTTCGTGATGTCAAACAAGAAATCCAAATATCCTGTGCTTCAAGTGGATTTGAGGCTAATATCAGATTTGGTGGTTGTAATAGTTTCTGCAGCCATTGGTGGGATTGCTTTTTCCTGTTTGGGACAACCGGTCATTGTAGGCTATCTTCTTGCAGGCTCCCTTATTGGACCAGGCGGTTTGAAATTTATTAGTGAAATGGTGCAGGTTGAGACTGTTGCACAATTTGGTGTGGTGTTTCTTCTCTTTGCTTTGGGACTGGAGTTTTCCCTGGCAAAGTTAAAAGCTGTAGGGCCTGTTGCTGTTCTTGGAGGGCTACTTCAAATTGTTATTTTTATGTTCATGTGTGGCATTCTTTCCATGTTATTTGGAGCCTCATTGTCTGAGGGTGTGTTTGTCGGTTCTTTTCTGTCAATGTCATCAACTGCAGTAGTGGTGAAGTTTTTGGTGGAGCGAAATAGTAATAATGCTCTTCATGTTCAGATTACAATTGGGACTCTTATTTTTCAGGATTGTGCAGTGGGTTTACTATTTGCTTTGCTACCAGTTTTGGGTGGTAACAGTGGCCTTTTACAAGGAATAATGTCAATGGGGAAACTGCTGCTAGTGTTGTCCTTGTATATCACTGCTACATCTATATTGTCTTGGTCGTTTGTTCCTCGATTTCTTAAATTGATGATGAGGTTGTCGTCACAGACAAATGAACTTTATCAGCTAGCTGCTGTTGCTTTCTGCTTGTTATCTGCATGGTGCAGTGATAAGCTTGGCCTTAGTCTTGAGCTGGGTTCATTCATGGCTGGTGTTATGATTTCCACAACAGACTTCGCTCAACATACTTTGGATCAGGTGGAACCAATTCGTAACCTATTTGCGGCTCTTTTTCTCTCAAGTATTGGAATGCTTATACATGTGCACTTCCTTTGGAGCCATGTGGACATCCTGCTGGCATCTGTTATCCTGGTTGTAGTTGTTAAAACTGCTGTTGCTGTTTTAGTTACGAAGGCTTTTGGTTATAGCCTTAAGACAGCATTTATTGTTGGTATCTCACTTGCTCAAATTGGTGAATTTGCTTTTGTCCTCCTGAGTCGAGCTTCAAATCTTCACCTTGTTGAGGGGAAAATGTATCTTCTTCTTCTAGGGACAACGGCGCTCAGTCTGGTTACAACTCCACTTTTGTTTAAATTGATACCTGCTGTCATGAATCTGGGTGTTCTCATGCACTGGTTCCCCTCTGAAAGTGGCACACAAATTGAGGGGAAAGCATCACTGAATGAAGCAAACAGAATGTTAGGAATCGGGGTTTCTTTACTGCGTTTCTGTTGCAAGTTCCATGAGGAGCTTCACATGAAACAGTCAGCATATTCACTTCTTCCATTGGCCACTCTTATTGCTTACGCTAATCCTATCACATCATACGCTGGTGTGTTGGCTTTTGTTGGCAAGCTGAGAAAGCACTTGCTGTTGCTTCTTCTGGCAATGGAGCTCGTGCTGCTTTTACTCTCTCCTTTTGCTTCTCCTCTCAGTTATGAAGGACAAGCATTGTTGAAGATTAAAGCTTCATTCAGCAATGTAGCAGATGTTCTGCATGATTGGGATGATTTGCATAATGATGATGACTTCTGTTCCTGGAGCGGAGTTTTGTGTGACAATGTCAGCCTTACTGTGCTTTCTTTAAACTTGTCAAGCTTGAATCTTGGTGGGGAGATATCACCGGCCATTGGTGATTTAGGAAACTTGCAATCCATAGACCTGCAGGGAAATAAACTAACTGGTCAAATTCCAGATGAAATTGGGAACTGTGCTGCACTTGTTCATCTGGATTTTTCTGATAATCAGCTATATGGTGATATACCTTTCTCCATATCAAAATTAAAGCAGCTTGTGTTTCTGAATTTAAAGAGTAATCAGTTGACTGGTCCTATCCCTTCAACTTTAACCCAAATTCCTAACTTGAAGACTCTCGATCTTGCACGAAATAAACTCACTGGTGAGATTCCAAGGCTACTCTACTGGAATGAAGTCCTGCAGTACCTCGGGTTGCGAGGGAACATGTTGAGTGGAACTCTGTCGTCTGATATCTGTCAGTTAACTGGTTTGTGGTATTTTGATGTGAGAGGCAATAATTTGACTGGCACCATACCTGACAGCATTGGAAACTGCACAAATTTTGAAATCTTGGATCTGTCATATAACCAGATTTCTGGGGAGATTCCCTATAATATTGGATTTCTTCAAGTAGCTACTTTGTCACTTCAAGGAAATAGACTAACCGGTAAGATTCCTGAAGTCATTGGTTTAATGCAAGCCCTTGCCATTTTGGATTTGAGTGAGAATGAGTTGATAGGACCCATCCCTCCCATACTAGGCAATTTGTCTTTTACTGGCAAGCTGTACCTTCATGGAAACATGATTACCGGACCAATACCACCAGAACTTGGCAATATGTCAAGACTAAGCTACCTGCAATTGAATGACAATCAACTAGTTGGTCAAATTCCCGATGAACTGGGGAAGCTTGAGCATTTGTTTGAATTGAATCTTGCCAATAATCATCTTGAAGGATCTATTCCACTAAACATTAGCTCCTGTAGTGCCTTGAATAAGTTTAACGTGCATGGAAATCATTTAAGTGGTTCAATTCCTTTGAGATTCAGCAGCCTTGAGAGCTTGACTTACTTAAATCTTTCTGCAAACAACTTCAAAGGGGCTATACCTGTTGAATTGGGCCATATAATAAATCTTGATACGTTGGATCTATCTAGCAATAATTTTTCAGGGCATGTTCCAGGGTCTGTTGGTTATCTTGAGCATCTTCTGACTTTGAACTTGAGCCATAATAGTCTTCATGGTCCCTTACCTGCTGAATTTGGAAATCTTAGAAGCATACAAATGATCGATATGTCATTCAACTATCTGTTGGGAAGTATCCCTCCAGAAATCGGTCAGCTGCAGAATCTTGTGTCTCTGATTTTAAACAACAATGATTTGCGCGGGAAGATTCCAGATCAGCTTACAAATTGCTTAAGTCTGAACTTCCTGAATGTCTCGTATAATAATTTATCAGGGGTCATTCCTCTCATGAAGAACTTCTCACGGTTTTCTGCTGAGAGCTTCGTTGGAAATCCATTATTATGCGGTAATTGGCTAGGATCGATATGTGATCCTTACATGCCAAAATCGAGAGTGGTTTTTTCAAGGGCTGCAGTTGTTTGTCTCATAGTTGGTACCATCATATTATTGGCAATGGTAACTCTTGCTATCTATAGATCAAGCCAATCAATGCAATTGGTTAAAGGATCCAGTGGAACTGGGCAAGGGCCACCCAAGCTTGTAATTCTTCATATGGGCCTGGCCATCCACACCTTTGATGATATTATGAAAGTTACTGAGAATCTCAATGAGAAGTATATTGTAGGGTATGGTGCCTCAAGTACCGTGTACAAGTGTGTTTTGAAGAATTCCCGGCCAATTGCAATTAAACGACTACACAACCAGCATCAACACAACTCAAGGGAGTTTGAGACAGAACTTGAAACTATTGGCAGCATCAGACATAGGAATCTTGTCTCTTTGCATGGTTATGCTCTAACTCCTAATGGAAATCTTCTTTTCTATGACTATATGGAGAATGGCTCTCTGTGGGATCTTCTTCATGGTCCCTTGAAAAAGGTAAAACTTGATTGGGAAGCACGCTTGAGGATTGCTGTGGGTGCTGCTGAAGGACTTGCTTACCTCCATCATGATTGCAGTCCTAGAATCATTCACAGGGATATTAAGTCCTCAAATATCTTGATAGATGAGAACTTTGAAGCTCGCCTGTCTGATTTTGGCATTGCCAAATGTTTGTCAACTACAAGAACTCATGCATCAACGTCTGTGCTTGGAACAATAGGCTATATTGACCCCGAGTATGCCCGGACATCTAGGTTGAATGAAAAATCCGATGTGTATAGCTTTGGCATTGTTCTACTCGAGCTACTAACAGGGAAGAAAGCAGTGGACAATGATTCCAACTTGCATCACTTGATATTATCCAAGGCAGATAACAACACTATAATGGAGACTGTAGATCCTGAGGTGTCTATTACCTGTATGGATCTGACCCATGTGAAGAAGACCTTTCAGCTTGCTCTTCTTTGCACGAAAAGGAACCCTTTTGAGAGGCAAACCATGCATGAGGTTGCCAGGGTTTTGGCATCACTACTCCCAGCACCTCCCAGCAACATCTTTGCCCCCCCTTCAAAGACGATCGATTATGCACAATTTGTGATTCAAAAGGGAAACAACCTTCATCCCCCAGAAATGAATAGGTTACAATCTCAGAAGTACAATAATGATCAATGGTTTGTTCGCTTTGAGAATGTTGTATCAAATAACAGCCTCTAG 4857 0.4198 MTTATLGPKKRRAVGLWCCVVCLAICARVCGAARSDQETRERFYGNIVNLTSPESNNTLAKMFDRVLEKEFSENDQPEGSDKSSFNSSVADQQAVLETVAKITHEKAKRNDTHEGKYGHILPNVVSHGTRAFQFQDVFSLENEDSDDVTTLIDKKDNVFVMSNKKSKYPVLQVDLRLISDLVVVIVSAAIGGIAFSCLGQPVIVGYLLAGSLIGPGGLKFISEMVQVETVAQFGVVFLLFALGLEFSLAKLKAVGPVAVLGGLLQIVIFMFMCGILSMLFGASLSEGVFVGSFLSMSSTAVVVKFLVERNSNNALHVQITIGTLIFQDCAVGLLFALLPVLGGNSGLLQGIMSMGKLLLVLSLYITATSILSWSFVPRFLKLMMRLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFAQHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWSHVDILLASVILVVVVKTAVAVLVTKAFGYSLKTAFIVGISLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLIPAVMNLGVLMHWFPSESGTQIEGKASLNEANRMLGIGVSLLRFCCKFHEELHMKQSAYSLLPLATLIAYANPITSYAGVLAFVGKLRKHLLLLLLAMELVLLLLSPFASPLSYEGQALLKIKASFSNVADVLHDWDDLHNDDDFCSWSGVLCDNVSLTVLSLNLSSLNLGGEISPAIGDLGNLQSIDLQGNKLTGQIPDEIGNCAALVHLDFSDNQLYGDIPFSISKLKQLVFLNLKSNQLTGPIPSTLTQIPNLKTLDLARNKLTGEIPRLLYWNEVLQYLGLRGNMLSGTLSSDICQLTGLWYFDVRGNNLTGTIPDSIGNCTNFEILDLSYNQISGEIPYNIGFLQVATLSLQGNRLTGKIPEVIGLMQALAILDLSENELIGPIPPILGNLSFTGKLYLHGNMITGPIPPELGNMSRLSYLQLNDNQLVGQIPDELGKLEHLFELNLANNHLEGSIPLNISSCSALNKFNVHGNHLSGSIPLRFSSLESLTYLNLSANNFKGAIPVELGHIINLDTLDLSSNNFSGHVPGSVGYLEHLLTLNLSHNSLHGPLPAEFGNLRSIQMIDMSFNYLLGSIPPEIGQLQNLVSLILNNNDLRGKIPDQLTNCLSLNFLNVSYNNLSGVIPLMKNFSRFSAESFVGNPLLCGNWLGSICDPYMPKSRVVFSRAAVVCLIVGTIILLAMVTLAIYRSSQSMQLVKGSSGTGQGPPKLVILHMGLAIHTFDDIMKVTENLNEKYIVGYGASSTVYKCVLKNSRPIAIKRLHNQHQHNSREFETELETIGSIRHRNLVSLHGYALTPNGNLLFYDYMENGSLWDLLHGPLKKVKLDWEARLRIAVGAAEGLAYLHHDCSPRIIHRDIKSSNILIDENFEARLSDFGIAKCLSTTRTHASTSVLGTIGYIDPEYARTSRLNEKSDVYSFGIVLLELLTGKKAVDNDSNLHHLILSKADNNTIMETVDPEVSITCMDLTHVKKTFQLALLCTKRNPFERQTMHEVARVLASLLPAPPSNIFAPPSKTIDYAQFVIQKGNNLHPPEMNRLQSQKYNNDQWFVRFENVVSNNSL 1618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03066 1618 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 940 1213 - -
Spst4g03066 1618 Gene3D Phosphorylase Kinase; domain 1 1264 1364 - -
Spst4g03066 1618 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 830 939 - -
Spst4g03066 1618 ProSiteProfiles Leucine-rich repeat profile. 807 829 IPR001611 GO:0005515
Spst4g03066 1618 SMART serkin_6 1289 1559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g03066 1618 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 804 1557 - -
Spst4g03066 1618 Gene3D - 175 558 IPR038770 -
Spst4g03066 1618 Gene3D Ribonuclease Inhibitor 831 903 IPR032675 -
Spst4g03066 1618 Gene3D Ribonuclease Inhibitor 664 830 IPR032675 -
Spst4g03066 1618 Gene3D Ribonuclease Inhibitor 904 1213 IPR032675 -
Spst4g03066 1618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1410 1422 IPR008271 GO:0004672|GO:0006468
Spst4g03066 1618 SUPERFAMILY Protein kinase-like (PK-like) 1267 1555 IPR011009 -
Spst4g03066 1618 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 1365 1565 - -
Spst4g03066 1618 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 664 829 - -
Spst4g03066 1618 SMART LRR_typ_2 996 1020 IPR003591 -
Spst4g03066 1618 SMART LRR_typ_2 805 829 IPR003591 -
Spst4g03066 1618 SMART LRR_typ_2 972 995 IPR003591 -
Spst4g03066 1618 SMART LRR_typ_2 1092 1115 IPR003591 -
Spst4g03066 1618 SMART LRR_typ_2 733 757 IPR003591 -
Spst4g03066 1618 SMART LRR_typ_2 1044 1068 IPR003591 -
Spst4g03066 1618 SMART LRR_typ_2 1140 1164 IPR003591 -
Spst4g03066 1618 SMART LRR_typ_2 853 877 IPR003591 -
Spst4g03066 1618 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 1260 1364 - -
Spst4g03066 1618 ProSiteProfiles Protein kinase domain profile. 1289 1559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g03066 1618 Pfam Protein kinase domain 1292 1552 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g03066 1618 ProSitePatterns Protein kinases ATP-binding region signature. 1295 1317 IPR017441 GO:0005524
Spst4g03066 1618 Gene3D Transferase(Phosphotransferase) domain 1 1365 1563 - -
Spst4g03066 1618 Pfam Leucine rich repeat 1070 1129 IPR001611 GO:0005515
Spst4g03066 1618 Pfam Leucine rich repeat N-terminal domain 665 706 IPR013210 -
Spst4g03066 1618 Pfam Sodium/hydrogen exchanger family 182 551 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Spst4g03066 1618 SUPERFAMILY L domain-like 666 966 - -
Spst4g03066 1618 SUPERFAMILY RNI-like 870 1199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03066 Spst-Chr4 70018586 70041162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03066 694 990 Receptor kinase-like Gene Family AT5G07180 36.120 4.32e-36 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Spst4g03066 Na_H_Exchanger 2.8e-70 CL0064
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03066 K20718 - gmx:100305433 1759.96