Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03046 ATGGCTTGTTCAGTGCATCTCATTCTCGTCCTCTTCTCCTTCCTGGCTTTGCTCTTCAACCCAACGTATGTCTGTGGCAATGATGAGCTTAGAGCTCTGATGGACCTGAAATCCAGTTTGGATCCACAGGGGCAGTTTCTGTCATCATGGACCATGGATGGCAACCCCTGTGCTGGTTCCTTTGAGGGAGTGGCTTGCAATGAGAAGGGTCAGGTGGCAAATGTTTCTCTGCAGGGGAAGGGCCTATCTGGGAGGCTTTCACCCGCCATTGCTGGACTTCAGCATTTGACAGCACTCTACTTGCATTACAACTCTTTGTACGGGGGGATTCCAAGGGAAGTTGCAAACTTGACTGAGCTCAGTGATTTGTACCTGAATGTGAATCATTTGTCCGGTGAAATCCCACCTGAGATTGGCAAGATGGAGAATCTTCAAGTTTTGCAGCTTTGTTATAATCAGTTAACAGGAAGCATACCTACACAACTTGGTGATTTGAAAAAGCTAAGTGTTCTTGCTCTTCAGTCAAACCAGTTGGCTGGAGCTATCCCTGCTAGTCTAGGTGATTTGGGGATGTTGATGAGGCTAGATTTGGGTTCTAATAGTCTCTTTGGTTCCATTCCCACTAAACTAGCCACTCTTCCTTCACTGCAAGTTCTGGATGTACACAACAATACTCTCTCTGGGAATGTACCCACCGCCTTGAAGAGACTAGAGGATGGATTTGTGTATGAACACAATGTGGGGTTATGTGGAGTTGGGTTTCCATCCTTGAAAGCTTGCTCTGCTTCGGATAATGTCAATCTCACTCGACCAGAACCTTATGGAGCTGGAGTTGACAGTCTCTCTAGGGATATCCCAGAAACTGCTAACGTAAAGTTGCCTTGCAATACAACTCATTGCCAAAATCCATCAAAATCCAAAAAAGCCACATCTATCACAGTTGGCGTAGTTCTAGTGACAATTGCTATATCAGCAATTGCCATTTTAACCTTCACTATGTATCGCCGGCGGAAACAAAAGCTTGGAAGTGCGTTTGATATCTCTGAAGGCCGTCTAAGTACAGATCAAGCCAAGAGTATATACAGGAAAAATGGATCTCCTTTGGTTAGCCTTGAGTACTCTAATGGGTGGGACCCTTTGGCTGATAGCAGGAATTTCAACGGGGATAAGCAAGATGTGTTCCAGAGTTTCAGGTTCAACTTGGAAGAAGTGGAGTCAGCTACTCAGTATTTCTCAGAGTTGAATTTGTTGGGAAAGAGCAACTTCAGTGCAACATATAAAGGGGTTTTAAGAGATGGATCTGCTGTTGCTGTCAAGAGCATCAGTAAAACTAGTTGCAAATCGGATGAAGCTGAATTTTTGAAGGGATTGAACATTTTAACCTCGCTGAGAAATGAGCATTTAGTGAGGTTGAGAGGTTTTTGTTGTTCAAGGGGACGAGGGGAATGCTTTCTGGTTTATGATTTTGTTCCTAATGGAAACTTGACACGCTACCTTGATGTGAAGGAAGGTGATGGAGAAGTTCTTGAATGGTCAACTAGAGTTTCTATTGTGAAAGGGATTGCTAAAGGTATAGCATATTTACATGCTCACAAAGCAAACAAACCAGCTCTTGTTCACCAAAATATCTCAGCTGAGAAAGTGCTCATTGATCAGCGGTACAACCCGATGCTTTCAGATTCTGGCCTGTACAAGCTTCTCACCAACGACATTGTCTTCTCTGCACTAAAGGGTAGCGCAGCAAAGGGTTACTTGGCTCCAGAATACACCACAACCGGCCGGTTCACGGAGAAAAGTGATGTTTACGCGTTTGGAGTGCTTCTTTTCCAGATCCTCACAGGAAAGCAGGAGATCACAAGCTCAATGCACCTTGCTGCAGAGTCCTTCGCATTCCATGAATTTATTGACCCAAACTTGCGTGGCAAGTTCTTCGAATACGAGGCAGCTAAACTAGCAAGAATGGCTTTACTTTGCTCCCATGAATCTCAATTTGAGAGACCAAGCATGGAAACCATTGTGCAAGAACTGGGGAATTGTAGTAGCTGTCTTTGA 2052 0.4444 MACSVHLILVLFSFLALLFNPTYVCGNDELRALMDLKSSLDPQGQFLSSWTMDGNPCAGSFEGVACNEKGQVANVSLQGKGLSGRLSPAIAGLQHLTALYLHYNSLYGGIPREVANLTELSDLYLNVNHLSGEIPPEIGKMENLQVLQLCYNQLTGSIPTQLGDLKKLSVLALQSNQLAGAIPASLGDLGMLMRLDLGSNSLFGSIPTKLATLPSLQVLDVHNNTLSGNVPTALKRLEDGFVYEHNVGLCGVGFPSLKACSASDNVNLTRPEPYGAGVDSLSRDIPETANVKLPCNTTHCQNPSKSKKATSITVGVVLVTIAISAIAILTFTMYRRRKQKLGSAFDISEGRLSTDQAKSIYRKNGSPLVSLEYSNGWDPLADSRNFNGDKQDVFQSFRFNLEEVESATQYFSELNLLGKSNFSATYKGVLRDGSAVAVKSISKTSCKSDEAEFLKGLNILTSLRNEHLVRLRGFCCSRGRGECFLVYDFVPNGNLTRYLDVKEGDGEVLEWSTRVSIVKGIAKGIAYLHAHKANKPALVHQNISAEKVLIDQRYNPMLSDSGLYKLLTNDIVFSALKGSAAKGYLAPEYTTTGRFTEKSDVYAFGVLLFQILTGKQEITSSMHLAAESFAFHEFIDPNLRGKFFEYEAAKLARMALLCSHESQFERPSMETIVQELGNCSSCL 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03046 683 FunFam Protein NSP-INTERACTING KINASE 2 139 261 - -
Spst4g03046 683 ProSiteProfiles Protein kinase domain profile. 411 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g03046 683 Gene3D Ribonuclease Inhibitor 23 311 IPR032675 -
Spst4g03046 683 FunFam Protein NSP-INTERACTING KINASE 2 490 680 - -
Spst4g03046 683 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
Spst4g03046 683 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 74 677 - -
Spst4g03046 683 Gene3D Phosphorylase Kinase; domain 1 381 489 - -
Spst4g03046 683 Pfam Protein tyrosine and serine/threonine kinase 415 676 IPR001245 GO:0004672|GO:0006468
Spst4g03046 683 Gene3D Transferase(Phosphotransferase) domain 1 490 682 - -
Spst4g03046 683 FunFam Protein NSP-INTERACTING KINASE 2 382 489 - -
Spst4g03046 683 SUPERFAMILY Protein kinase-like (PK-like) 389 676 IPR011009 -
Spst4g03046 683 SUPERFAMILY L domain-like 25 236 - -
Spst4g03046 683 FunFam Leucine-rich repeat receptor-like kinase 28 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03046 Spst-Chr4 69818251 69821519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03046 7 524 Miscellaneous Gene Families AT4G22730 55.492 0.0 574
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Spst4g03046 PK_Tyr_Ser-Thr 1.1e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03046 - - vum:124819657 1246.11