Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03044 ATGGCTTCCCTTGCAGCCTCCACTGCTGCTGCTTCCCTTGGCATGTCAGAAATGCTTGGAAACCCCATCAACCTCAGTGGTGCCACAAGGCCTGCTCCATCTGCCTCTAGCCCTGCCTCCTTCAAGACTGTGGCTCTTTTCTCCAAAAAGAAGGCAGCACCGCCTGCTCCAAAAAAAGCTGCTGCTGTCTCTCCTGCCAATGATGAGCTTGCCAAGTGGTATGGTCCTGATAGAAGGATCTTCTTGCCAGAGGGTCTTTTGGACCGATCTGAGATCCCAGAGTACTTGACTGGAGAAGTCCCCGGAGACTATGGTTATGACCCATTTGGTCTTAGCAAGAAGCCAGAGGACTTTGCCAAATATCAGGCATTTGAGTTGATTCACGCTAGATGGGCAATGCTTGGTGCTGCTGGATTCATCATTCCTGAGGCCTTCAACAAATATGGAGCAAACTGTGGTCCTGAGGCTGTTTGGTTCAAGACAGGAGCTCTGCTTCTTGATGGGGGTACGTTGAACTACTTTGGGAAACCTATTCCCATCAATCTCATTGTGGCTGTCATTGCTGAGATAGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGAATTTTGAAGACAAACTTCATCCAGGTGGTCCATTTGATCCATTGGGGCTTGCAAACGATCCAGATCAGGCTGCTCTGCTAAAGGTGAAGGAAATTAAGAATGGTAGACTTGCTATGTTTGCCATGCTTGGTTTCTACTTCCAAGCCTATGTCACTGGAGAAGGTCCTGTTGAGAACCTTGCAAAGCATCTCAGTGACCCTTTTGGCAACAACTTGCTCACAGTCATTGCTGGCTCTGCTGAGAGAACTCCAACGCTCTAA 876 0.484 MASLAASTAAASLGMSEMLGNPINLSGATRPAPSASSPASFKTVALFSKKKAAPPAPKKAAAVSPANDELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPINLIVAVIAEIVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLANDPDQAALLKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGSAERTPTL 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03044 291 Pfam Chlorophyll A-B binding protein 93 254 IPR022796 -
Spst4g03044 291 SUPERFAMILY Chlorophyll a-b binding protein 72 282 - -
Spst4g03044 291 Gene3D Chlorophyll a/b binding protein domain 80 291 - -
Spst4g03044 291 FunFam Chlorophyll a-b binding protein, chloroplastic 80 291 - -
Spst4g03044 291 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 34 280 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03044 Spst-Chr4 69806490 69808861 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03044 11 291 Chloroplast and Mitochondria Gene Families AT4G10340 82.270 8.99e-154 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03044 K08916 - gmx:100806585 537.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g03044 4 69806490 69808861 Spst4g03044 4 69806490 69808861 ECH
Spst4g03044 4 69806490 69808861 Spst10g00310 10 3117356 3119654 PCT