Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03029 ATGGGTTACAAATGGCCCCTCCATTGGTTTATGGTGGTTGTCCCAGTTGCTGATTACTTTTCTTTTCTTCTTTTTGGTTTTTATGCAGTAATCATAGATACAGGACTTATCCTGTCTCAGTACTGCACTGCAATCACCCCAGGACATCTTGTCCATCTCGTCCAAAGATTGGTTACAATCATTACTGAAGTCTGCACTGGCAGTAGCACTTTCCATTATCTGAAACAAATCCTAGTGTTTTGGTGCTTGTTCAGAAGGTTTGAAATGGCTGTTTCTTTGTGGAGAAGTCGCACTGCTACATCAACACTGAACTTGTTTACCAATACTCTTCGTCGATTCTCTTCTGAGGTAACAAACACTAGTACTCAAAGAACACGAGAGAGTATGATGAGTCAAATGATATATTCTGACATAAACTCACGAATTGGGAGTTGCATGCCACTGTCTGCAATGCGAATTGGAACAATCATTCACAACATTGAGTTGAACCCAGGCCAAGGTGGCAAGCTTGTCCGAGCCGCCGGAACTAGTGCAAAGATCTTGAAAGAGCCCTCATCAGCATACTGTTTAATCCAACTGCCCTCGGGTGTTAAAAAGTTGATTGATTCTAGGTGTCGGGCCACCGTTGGTGTGGTGTCTAATCCAAGCCATGGGGATCGCAAGCTTAGGAAGGCAGGACACAGCCGATGGCTTGGTAGAAGACCTGTTGTTCGAGGAGTGGCAATGAATCCCGTAGATCATCCTCACGGTGGAGGAGAGGGTAAGAGCAAGAGTAGTGGAAAATGGGGGCAAGGATCTCGCACTCCTTGGGGCAAGCCAACTAAGAGTGGCTACAAAACTGGACCCCTTAAGCGCAGAAGGTAG 864 0.4583 MGYKWPLHWFMVVVPVADYFSFLLFGFYAVIIDTGLILSQYCTAITPGHLVHLVQRLVTIITEVCTGSSTFHYLKQILVFWCLFRRFEMAVSLWRSRTATSTLNLFTNTLRRFSSEVTNTSTQRTRESMMSQMIYSDINSRIGSCMPLSAMRIGTIIHNIELNPGQGGKLVRAAGTSAKILKEPSSAYCLIQLPSGVKKLIDSRCRATVGVVSNPSHGDRKLRKAGHSRWLGRRPVVRGVAMNPVDHPHGGGEGKSKSSGKWGQGSRTPWGKPTKSGYKTGPLKRRR 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03029 287 Gene3D - 136 212 IPR014722 -
Spst4g03029 287 NCBIfam 50S ribosomal protein L2 132 284 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Spst4g03029 287 ProSitePatterns Ribosomal protein L2 signature. 235 246 IPR022671 GO:0003735|GO:0005840|GO:0006412
Spst4g03029 287 FunFam 50S ribosomal protein L2 213 287 - -
Spst4g03029 287 SUPERFAMILY Translation proteins SH3-like domain 142 276 IPR008991 -
Spst4g03029 287 SMART Ribosomal_L2_C_2 140 273 IPR022669 GO:0003735|GO:0005840|GO:0006412
Spst4g03029 287 FunFam 60S ribosomal protein L2, mitochondrial 136 212 - -
Spst4g03029 287 MobiDBLite consensus disorder prediction 241 287 - -
Spst4g03029 287 PANTHER RIBOSOMAL PROTEIN L2 130 286 IPR002171 GO:0003735|GO:0005840|GO:0006412
Spst4g03029 287 Pfam Ribosomal Proteins L2, C-terminal domain 142 271 IPR022669 GO:0003735|GO:0005840|GO:0006412
Spst4g03029 287 Gene3D Ribosomal protein L2, domain 3 213 287 IPR014726 -
Spst4g03029 287 MobiDBLite consensus disorder prediction 259 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03029 Spst-Chr4 69725089 69728654 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03029 139 253 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 42.975 7.00e-23 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03029 - - gmx:100792418 346.665