LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst4g03029	ATGGGTTACAAATGGCCCCTCCATTGGTTTATGGTGGTTGTCCCAGTTGCTGATTACTTTTCTTTTCTTCTTTTTGGTTTTTATGCAGTAATCATAGATACAGGACTTATCCTGTCTCAGTACTGCACTGCAATCACCCCAGGACATCTTGTCCATCTCGTCCAAAGATTGGTTACAATCATTACTGAAGTCTGCACTGGCAGTAGCACTTTCCATTATCTGAAACAAATCCTAGTGTTTTGGTGCTTGTTCAGAAGGTTTGAAATGGCTGTTTCTTTGTGGAGAAGTCGCACTGCTACATCAACACTGAACTTGTTTACCAATACTCTTCGTCGATTCTCTTCTGAGGTAACAAACACTAGTACTCAAAGAACACGAGAGAGTATGATGAGTCAAATGATATATTCTGACATAAACTCACGAATTGGGAGTTGCATGCCACTGTCTGCAATGCGAATTGGAACAATCATTCACAACATTGAGTTGAACCCAGGCCAAGGTGGCAAGCTTGTCCGAGCCGCCGGAACTAGTGCAAAGATCTTGAAAGAGCCCTCATCAGCATACTGTTTAATCCAACTGCCCTCGGGTGTTAAAAAGTTGATTGATTCTAGGTGTCGGGCCACCGTTGGTGTGGTGTCTAATCCAAGCCATGGGGATCGCAAGCTTAGGAAGGCAGGACACAGCCGATGGCTTGGTAGAAGACCTGTTGTTCGAGGAGTGGCAATGAATCCCGTAGATCATCCTCACGGTGGAGGAGAGGGTAAGAGCAAGAGTAGTGGAAAATGGGGGCAAGGATCTCGCACTCCTTGGGGCAAGCCAACTAAGAGTGGCTACAAAACTGGACCCCTTAAGCGCAGAAGGTAG	864	0.4583	MGYKWPLHWFMVVVPVADYFSFLLFGFYAVIIDTGLILSQYCTAITPGHLVHLVQRLVTIITEVCTGSSTFHYLKQILVFWCLFRRFEMAVSLWRSRTATSTLNLFTNTLRRFSSEVTNTSTQRTRESMMSQMIYSDINSRIGSCMPLSAMRIGTIIHNIELNPGQGGKLVRAAGTSAKILKEPSSAYCLIQLPSGVKKLIDSRCRATVGVVSNPSHGDRKLRKAGHSRWLGRRPVVRGVAMNPVDHPHGGGEGKSKSSGKWGQGSRTPWGKPTKSGYKTGPLKRRR	287

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst4g03029	287	Gene3D	-	136	212	IPR014722	-
	Spst4g03029	287	NCBIfam	50S ribosomal protein L2	132	284	IPR005880	GO:0003723\|GO:0003735\|GO:0006412\|GO:0015934\|GO:0016740
	Spst4g03029	287	ProSitePatterns	Ribosomal protein L2 signature.	235	246	IPR022671	GO:0003735\|GO:0005840\|GO:0006412
	Spst4g03029	287	FunFam	50S ribosomal protein L2	213	287	-	-
	Spst4g03029	287	SUPERFAMILY	Translation proteins SH3-like domain	142	276	IPR008991	-
	Spst4g03029	287	SMART	Ribosomal_L2_C_2	140	273	IPR022669	GO:0003735\|GO:0005840\|GO:0006412
	Spst4g03029	287	FunFam	60S ribosomal protein L2, mitochondrial	136	212	-	-
	Spst4g03029	287	MobiDBLite	consensus disorder prediction	241	287	-	-
	Spst4g03029	287	PANTHER	RIBOSOMAL PROTEIN L2	130	286	IPR002171	GO:0003735\|GO:0005840\|GO:0006412
	Spst4g03029	287	Pfam	Ribosomal Proteins L2, C-terminal domain	142	271	IPR022669	GO:0003735\|GO:0005840\|GO:0006412

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst4g03029	Spst-Chr4	69725089	69728654	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst4g03029	139	253	Cytoplasmic Ribosomal Protein Gene Family	AT3G51190	42.975	7.00e-23	93.2

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst4g03029	-		-	gmx:100792418	346.665

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