Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03024 ATGGAGGGAAAAGAGTCTTTGGGTCATTACAAAGTTGGGTCTTTGCCAACTTTATTTTACATTCCTGACTTCATCACGGACAGTGACCAAAGCCTTCTTCTCAATAATATTTATGAAGCCCCTGCATCAAAGTGGAAGATGTTGAAGAATAGAAGGCTACAGAATTGGGGTGGTGTTGTCCACGAGAAGGGCCTTCTACCTCAAGTTTTGCCTCCATGGCTAACAAATCTCACACAAAAAATATATGACGACTGTGGGCTATTCCCATCATCAATGAACCATGTTCTTATCAATGAATACCTACCTAATCAAGGCATAATGCCACATCAGGATGGACCTGCCTATTTTCCAGTAGTAGCTATTCTATCACTTGGATCTCCTGTTGTCATGGACTTCACTCCCCATGCAAGATTCAAACTGGATTCCCAAAATGATATTGACCAAAACTCTGATTTTGAGATTGGGAAAGATAAGTGGCTTGATGATCACCATCCTTTCTCTGTTTTATTGATGCCACGCAGTTTACTTATATTCAAGGACAAAGCATACTCAGATTACTTACATGGTATAAAAGATTGTGCGGTACATTGCTACGAATGGGCCGTAAATGAAACTCAAGCTTTGAAACACAAGGAATCAGATGAAGACTTGTTTAGCTTAGAGAATGCATTGGAAACAATAGGAAAGGAAGAGTATAAGAATATATCAAGAACATCCAATAGAGTTTCATTGACTTGTCGATTGATATCTAATGTTGTGTGGAATGAGATGAATTTAGATGGAATAGAGGCGAAGCGGTGGAAGAGGGTTGGAGGAGAGGAGAATCGTGATTTGGGAATGCAAAGGATGCCTTTGAAGGAAATAAAAATTGAGATAGCGGCTGATCACATAGGAATATCCAGTACTCTGTCAGATTTCATGCCTGCCATGAAAAAGAATTCTGAGCAGACTCGCATTGGATCTGTATTCAACAAGTTGGTGAAGGAGCTTGGAGAACCTGTTGACTTTGAACTTCCAGATTGGTTTAATAAATCAAAGCCAATGCAGTACACCTATATAAAGCGCAATATATATCTCACTAAGAAGGTCAAGAGATCCAGATTTGATGATGATGGCATATTTTGTTCCTGTACTCCTTCCCCTGGATCTACTAGTGTATGTGGTAGAGATTGCCACTGTGGGATGCTTCTGTCTAGCTGTTCATCAGGCTGTAAATGTGGGAGCTCTTGTCTTAACAAACCATTTCAGAATCGCCCCGTAAAAAAGATGAAATTGGTTAAGACTGAGAAATGTGGTTCTGGAATTGTTGCTGACGAAGATATCATGCTTGGGGAGTTTGTCATAGAATATGTTGGAGAAGTCATTGATGACAAAACATGTGAGGAAAGGCTTTGGAACATGAAACATCGTGGGGAAACTAACTTCTACTTATGTGAAATCAATCGAGATATGGTGATAGATGCAACATATAAAGGAAACAAATCGAGATACATCAATCATAGTTGCTGCCCCAATACTGAGATGCAGAAATGGATAATTGATGGTGAAACAAGAATTGGCATATTTGCAACTCGCGACATAGAAAAGGGCGAGCATCTGACTTATGATTACCAGTTTGTTCAATTTGGTGCAGATCAAGATTGTCACTGTGGTGCTGCTGAGTGTAGGCGTAAGCTGGGTGTCCGACCCACCAAGCCTAAGATCTCTTCAGATGCTGCATTAAAATTAGTCGCATACCAGGTTTATCAGAATGGAGGTTTGCAAATTGGAAGTTCTCGTGTTGACCACCGAAAATGCTTACACAATTGCATTGGTGAAGTTATTAGGATAAAGCACCTTGAAACTGAGAGGTTTGGAGTCATTAAACGGTTTGATAAATATTCTCGAAAACATTCAATCATGTTTGAAGATGGTTGTGTTGAAATTTATGACATGTCAAAAGAGGACTGGGAACTTGTGCAGGTGAAAGGAATTGAAAAACTGAAAATTGCAGCATTATTCTTTCATTGCATGTGCATAATTCTTGTAGTTGACGAGGCACTGATCAAACAGAATATGAAGCAGGATAATATATGGACACACAAGTCTTACTGA 2094 0.3954 MEGKESLGHYKVGSLPTLFYIPDFITDSDQSLLLNNIYEAPASKWKMLKNRRLQNWGGVVHEKGLLPQVLPPWLTNLTQKIYDDCGLFPSSMNHVLINEYLPNQGIMPHQDGPAYFPVVAILSLGSPVVMDFTPHARFKLDSQNDIDQNSDFEIGKDKWLDDHHPFSVLLMPRSLLIFKDKAYSDYLHGIKDCAVHCYEWAVNETQALKHKESDEDLFSLENALETIGKEEYKNISRTSNRVSLTCRLISNVVWNEMNLDGIEAKRWKRVGGEENRDLGMQRMPLKEIKIEIAADHIGISSTLSDFMPAMKKNSEQTRIGSVFNKLVKELGEPVDFELPDWFNKSKPMQYTYIKRNIYLTKKVKRSRFDDDGIFCSCTPSPGSTSVCGRDCHCGMLLSSCSSGCKCGSSCLNKPFQNRPVKKMKLVKTEKCGSGIVADEDIMLGEFVIEYVGEVIDDKTCEERLWNMKHRGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIEKGEHLTYDYQFVQFGADQDCHCGAAECRRKLGVRPTKPKISSDAALKLVAYQVYQNGGLQIGSSRVDHRKCLHNCIGEVIRIKHLETERFGVIKRFDKYSRKHSIMFEDGCVEIYDMSKEDWELVQVKGIEKLKIAALFFHCMCIILVVDEALIKQNMKQDNIWTHKSY 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03024 697 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 343 598 IPR025787 -
Spst4g03024 697 ProSiteProfiles AWS domain profile. 370 419 IPR006560 GO:0005634|GO:0042054
Spst4g03024 697 Gene3D - 10 255 IPR037151 -
Spst4g03024 697 ProSiteProfiles SET domain profile. 421 538 IPR001214 GO:0005515
Spst4g03024 697 ProSiteProfiles Post-SET domain profile. 544 560 IPR003616 -
Spst4g03024 697 Pfam SET domain 432 537 IPR001214 GO:0005515
Spst4g03024 697 SMART shorttest3 370 420 IPR006560 GO:0005634|GO:0042054
Spst4g03024 697 FunFam Histone-lysine N-methyltransferase 336 576 - -
Spst4g03024 697 CDD SET_ASHR3-like 422 560 - -
Spst4g03024 697 SMART PostSET_3 544 560 IPR003616 -
Spst4g03024 697 SMART set_7 421 544 IPR001214 GO:0005515
Spst4g03024 697 SUPERFAMILY Clavaminate synthase-like 16 249 - -
Spst4g03024 697 Gene3D SET domain 339 575 IPR046341 -
Spst4g03024 697 PANTHER SET DOMAIN PROTEINS 335 584 - -
Spst4g03024 697 SUPERFAMILY SET domain 333 550 IPR046341 -
Spst4g03024 697 Pfam 2OG-Fe(II) oxygenase superfamily 55 247 IPR027450 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03024 Spst-Chr4 69687419 69702879 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03024 394 556 C2H2 Transcription Factor Family AT2G23740 34.973 4.84e-23 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Spst4g03024 2OG-FeII_Oxy_2 5.4e-11 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03024 - - ahf:112751595 875.159