Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03003 ATGAGTTTAGGTAAGGACGGTCACGGCAAAGACAAAGGCGGAGAAATCGGAGGCGCCGGAGGAAAGCTGCCGGAGCTGAAAGCAGGGAATGAAGAGGGAAAGAGTATGGGAGAGAAATTAGGGTTTTTTGAATGGTTAAAGGCATTGAAGAAGAAGAAGAAGAAGGTGACGTTTGATTCTACTCCATTCATTGCTGCCAAATGCTTCAAGGATGCACGGATAAGGTTTCCCGAGAACAAGGGAGTTGTAAAACAAGGAGGATCATTGACTGCTGTAAAACATCACAAACTCTGGATTCGGTTCATTGGGGTTGGGGAACCATTAATTTGTGGTGAAGCTGCTGGAAAGATGGAGAAAGATGATGTGAACCATGGTAATTATGAGCATGACATAGAAATTGAAGGTCTGTTGGACGGGAATGAGGAAAATGTAGGGTACAGGTCAGGGTTATCTGACAGAAACCTGGCTCATACAAAGCCACTTCTTGTGAAGAGGACCAACACCACCTCACAGATTGCTATAGTTGGTGCCAACCTCAGCCCTATTGAAAGCCTTGACTATGAGATTTTTGATAATGAAATATTGAAGCATGACTGGAGGTCCAGGAAGAAGTTTCAGATAATCCAATATCTGGTGCTTAAGTGGGGATTTGCTCTTCTTATTGGATTAGGCACAGGGTTGGTTGGCTTCTTTAACAGTTTTGCAGTTGAGAACATAGCTGGTTTCAAGCTGCTTATTACCACCACTCTCGTGTCTAAACACAGATATCTTGGGGCATTTTTAGCATATGCTGGTGCGAATATATTTTTAGCAGCAGCTGCTGCTGCACTTTGTGCTTTCATTGCTCCAGCAGCGGCAGGCTCTGGGATTCCAGAGGTAAAAGCATATCTCAACGGGGTGGATGCTCACTATATATTGGCTCCAAGCACTCTTTTTGTCAAGATAATTGGTTCCATCCTTGGAGTTTCTGCTGGATTTGTGGTGGGCAAAGAGGGACCTATGGTACATACAGGTGCATGCATAGCTTCTTTATTGGGCCAGGGTGGATCTCGCAAGTATCACTTGACTTGCAATTGGCTTAGATATTTCAAAAACGACCGAGACCGGCGAGACATGATAACTTGTGGTGCAGCTGCTGGTGTTGCGGCTGCCTTTCGTGCACCAGTAGGTGGTGTCCTCTTTGCTCTTGAAGAGGCAGCTTCATGGTGGCGGAGTGCACTTCTTTGGAGAACATTCTTCACAACTGCAGTGGTTGCTATTGTTTTAAGAGTTGCAATTCAGTTTTGTGCCACAGGAAAATGTGGGCAATTTGGTGAAGGTGGTCTGATATTGTATGATGTTGGCTCAGCCACTATTACGTATAGTGCTAGTGATATATTTGCAGTACTACTTGTGGGAGCCGTTGGTGGAATTCTTGGAAGCATATATAATTACCTTGTGGATAAGGTTGTTCGAACATATAGCATCATCAATGAAAAAGGTCCAGCTTTCAAGATCTCTCTTGTTGTGACAATTTCTCTTTTGACATCATGTTGTTTTTATTTCTTGCCGTGGGTTGCACACTGCATTCCTTGTCCTTCTGATTCCACATCAACCTGCCACTCAATTAGTGAGTCTGGAGAATACCAAAACTTTCAATGCCCTCCTGGCTACTATAATGACCTTGCTTCCCTCTTTCTGAACACCAATGATGATGCTATTCGTAATCTATTCAGCCCCAAGATAATCAAAGAGTTTCATATTTTCAGTTTATTTATCTACTTTACTACTATTTACTGTATTGGGATAATCACTTATGGTATTGCTATTCCATCCGGGCTCTTCATTCCTGTGATACTGGCTGGTGCTGCCTATGGCCGTCTTGCTAGCCGGCTATTTGAACCGATCACCAAACTTGACAGAGGACTCTTTGCCCTACTTGGAGCTGCTTCCTTCCTTGGTGGCACCATGAGAATGACAGTTTCTATTTGTGTCATATTGCTTGAACTCACTAATGATCTCTTGTTACTTCCACTTGTGATGTTGGTCTTATTAATCTCAAAATCTGTGGCCGACATCTTCAACAAGGGTGTCTATGATCTGATACTTCAGATAAAAGGGCTTCCTTATTTGGAGGTTCATGCAGAACCTTACATGAGGAATTTAGTTACACGTGATGTTATTTCAGGTCCATTGATTACCTTTTCTGGCATTGAAAAGGTTGGGAATATATGGCATGCTTTGAATACTACAGGGCATAATGGGTTTCCTGTCATTGATGAACCACCTTTTACAGATGCACCAGAGTTATGTGGGCTTGTACTGAGGTCTCATTTACTAGTGTTGCTAAAGGAGAAGATTTTTTCCAGAGACAGGGATTTCATTGATCAAATTATTTTCCAAAGAATTTCTGCTTCAGATTTTGGAAAGGCAGGATCAGGAAAGGGGATCAAACTAGAGGATATTGATATTGATGAGGAAGAGATGGATATGTATATTGATCTCCATCCCATAACTAATGCATCCCCTTACACTGTGGTTGAGACAATGTCACTTGCCAAAGCTGCTGTTATTTTCCGCCAACATGGACTCAGGCACATGTGTGTTGTTCCAAAGAGCCAAGGGAGACCTCCAGTTGTTGGGATTCTAACACGCCATGATTTTATGCCAGAGCATGTTCTGGGACTTTACCCTCATATCAAGCCTCATAAACAGCATTGA 2700 0.4285 MSLGKDGHGKDKGGEIGGAGGKLPELKAGNEEGKSMGEKLGFFEWLKALKKKKKKVTFDSTPFIAAKCFKDARIRFPENKGVVKQGGSLTAVKHHKLWIRFIGVGEPLICGEAAGKMEKDDVNHGNYEHDIEIEGLLDGNEENVGYRSGLSDRNLAHTKPLLVKRTNTTSQIAIVGANLSPIESLDYEIFDNEILKHDWRSRKKFQIIQYLVLKWGFALLIGLGTGLVGFFNSFAVENIAGFKLLITTTLVSKHRYLGAFLAYAGANIFLAAAAAALCAFIAPAAAGSGIPEVKAYLNGVDAHYILAPSTLFVKIIGSILGVSAGFVVGKEGPMVHTGACIASLLGQGGSRKYHLTCNWLRYFKNDRDRRDMITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAIVLRVAIQFCATGKCGQFGEGGLILYDVGSATITYSASDIFAVLLVGAVGGILGSIYNYLVDKVVRTYSIINEKGPAFKISLVVTISLLTSCCFYFLPWVAHCIPCPSDSTSTCHSISESGEYQNFQCPPGYYNDLASLFLNTNDDAIRNLFSPKIIKEFHIFSLFIYFTTIYCIGIITYGIAIPSGLFIPVILAGAAYGRLASRLFEPITKLDRGLFALLGAASFLGGTMRMTVSICVILLELTNDLLLLPLVMLVLLISKSVADIFNKGVYDLILQIKGLPYLEVHAEPYMRNLVTRDVISGPLITFSGIEKVGNIWHALNTTGHNGFPVIDEPPFTDAPELCGLVLRSHLLVLLKEKIFSRDRDFIDQIIFQRISASDFGKAGSGKGIKLEDIDIDEEEMDMYIDLHPITNASPYTVVETMSLAKAAVIFRQHGLRHMCVVPKSQGRPPVVGILTRHDFMPEHVLGLYPHIKPHKQH 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03003 899 MobiDBLite consensus disorder prediction 1 15 - -
Spst4g03003 899 Pfam Voltage gated chloride channel 271 685 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Spst4g03003 899 PRINTS Plant CLC chloride channel signature 555 571 IPR002251 GO:0005247|GO:0006821|GO:0016020
Spst4g03003 899 PRINTS Plant CLC chloride channel signature 399 407 IPR002251 GO:0005247|GO:0006821|GO:0016020
Spst4g03003 899 PRINTS Plant CLC chloride channel signature 431 438 IPR002251 GO:0005247|GO:0006821|GO:0016020
Spst4g03003 899 PRINTS Plant CLC chloride channel signature 188 196 IPR002251 GO:0005247|GO:0006821|GO:0016020
Spst4g03003 899 PRINTS Plant CLC chloride channel signature 413 423 IPR002251 GO:0005247|GO:0006821|GO:0016020
Spst4g03003 899 SUPERFAMILY Clc chloride channel 194 706 IPR014743 -
Spst4g03003 899 ProSiteProfiles CBS domain profile. 831 895 IPR000644 -
Spst4g03003 899 CDD CBS_pair_voltage-gated_CLC_euk_bac 718 884 - -
Spst4g03003 899 Gene3D Clc chloride channel 206 705 - -
Spst4g03003 899 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 162 887 - -
Spst4g03003 899 Pfam CBS domain 835 881 IPR000644 -
Spst4g03003 899 SUPERFAMILY CBS-domain pair 708 882 IPR046342 -
Spst4g03003 899 Gene3D - 706 888 IPR046342 -
Spst4g03003 899 MobiDBLite consensus disorder prediction 1 30 - -
Spst4g03003 899 FunFam Chloride channel ClC3 206 543 - -
Spst4g03003 899 PRINTS Chloride channel signature 314 333 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Spst4g03003 899 PRINTS Chloride channel signature 283 300 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Spst4g03003 899 PRINTS Chloride channel signature 635 651 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Spst4g03003 899 PRINTS Chloride channel signature 603 623 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Spst4g03003 899 PRINTS Chloride channel signature 378 397 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Spst4g03003 899 PRINTS Chloride channel signature 691 705 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Spst4g03003 899 PRINTS Chloride channel signature 653 672 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03003 Spst-Chr4 69492664 69504109 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03003 120 897 Ion Channels AT5G49890 70.332 0.0 1090
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03003 K05016 - gmx:100809070 1268.06