Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03002 ATGGCAACTAGACTTCAGTTTGAAAATAATTGTGAAGTTGGAGTCTTCTCCAAACTTACCAATGCCTACTGCTTGGTTGCAATTGGAGGTTCTGAAAGCTTCTACAGTGTATTTGAAGCTGAGTTAGCGGATGTTATCCCTGTGGTCAAGACATCCATTGGTGGTACTCGAATTATTGGTCGGCTTTGTGCTGGAAACAAGAATGGGCTTCTCTTGCCACATACCACCACAGATCAAGAACTTCAACATTTGAGAAACAGTCTACCCGATCAAGTTGTTGTTCAGCGTATAGATGAAAGGTTATCTGCTCTGGGGAATTGTATAGCATGTAATGACCACGTGGCCCTCACACACACTGATCTTGACAGGGAGACAGAAGAGATGATTGCAGATGTTCTTGGAGTGGAAGTTTTCAGGCAGACCATTGCTGGCAACATTCTTGTTGGTAGTTACTGTGCCTTCTCCAATAGAGGTGGTTTGGTCCACCCTCATACCTCCATAGAAGACTTGGATGAGCTTTCTACACTTCTTCAGGTTCCTTTAGTGGCTGGGACCGTGAACCGGGGAAGTGAGGTAATAGCAGCTGGAATGACAGTCAATGATTGGACAGCATTTTGTGGTTCAGACACCACAGCAACAGAGCTATCTGTAATTGAGAGTGTTTTCAAGCTGAGAGAAGCTCAGCCCAGTGCCATTGTTGACGAGATGAGAAAATCCCTCGTTGATACCTATGTCTGA 738 0.4485 MATRLQFENNCEVGVFSKLTNAYCLVAIGGSESFYSVFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIDERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCAFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTAFCGSDTTATELSVIESVFKLREAQPSAIVDEMRKSLVDTYV 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03002 245 Pfam eIF-6 family 4 203 IPR002769 GO:0042256|GO:0043022
Spst4g03002 245 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 244 IPR002769 GO:0042256|GO:0043022
Spst4g03002 245 NCBIfam translation initiation factor IF-6 4 224 IPR002769 GO:0042256|GO:0043022
Spst4g03002 245 Hamap Translation initiation factor 6 [eif6]. 1 245 IPR002769 GO:0042256|GO:0043022
Spst4g03002 245 FunFam Eukaryotic translation initiation factor 6 1 225 - -
Spst4g03002 245 CDD IF6 2 223 IPR002769 GO:0042256|GO:0043022
Spst4g03002 245 SUPERFAMILY Pentein 1 224 - -
Spst4g03002 245 SMART eIF6neu2 3 204 IPR002769 GO:0042256|GO:0043022
Spst4g03002 245 PIRSF Transl_init_IF-6 1 226 IPR002769 GO:0042256|GO:0043022
Spst4g03002 245 Gene3D - 1 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03002 Spst-Chr4 69489560 69491952 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03002 1 245 Eukaryotic Initiation Factors Gene Family AT3G55620 92.245 6.98e-175 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03002 K03264 - gmx:100800352 481.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g03002 4 69489560 69491952 Spst10g00289 10 2887893 2891635 PCT