Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02988 ATGGAGATAGAAGCAACATCTAGGCCTTCAGGGAATGGTTCCACCCTACCAGGGTTGAGTCCTTTGAGTGAGACCCTTTGGAGAGAGAAGGCCAACACAGAAATCTTTGGAGATGTCTCAGCCAGGCTCACATGGAAGGATCTGACTGTGATGGTCACTCTTAGCAACGGTGAGACGCAGAACGTTTTGGAGGGTCTAACTGGTTATGCTGAACCAGGAACCTTCACTGCTCTCATGGGACCCTCCGGTTCAGGAAAATCCACTCTCCTTGATGCACTTTCTAGTCGCCTAGCTGCAAATGCCTTTCTTTCAGGCACCATCCTCCTCAATGGACGCAAAGCCAAACTTTCTTTTGGCACTGCAGCTTATGTGACACAAGACGACAACTTGATCGGTACCCTAACAGTAAGAGAAACAATATCATATTCAGCTCGTTTGCGTTTGCCTGATAACATGCCCTGGTCAGATAAGAGAGCATTGGTGGAGAGCACCATTGTGGCAATGGGGCTGCAAGATTGTGCAGACACAGTGATTGGAAACTGGCACTTGCGTGGTATCAGTGGTGGGGAGAAACGAAGGGTTAGCATTGCCTTGGAAATCTTGATGAGGCCAAGGTTGCTCTTCCTTGATGAACCAACAAGTGGACTTGACAGTGCTTCAGCATTCTTTGTGACTCAGACACTACGTGCATTGGCAAGGGATGGGAGAACCGTGATAGCCTCTATTCATCAACCTAGCAGTGAAGTGTTTGAGTTATTTGACCAATTGTACTTGCTTTCTAGTGGCAAAACTGTTTATTTTGGGCAAGCTTCAGAGGCATATGAGTTCTTTGCACAAGCTGGCTTCCCTTGTCCTGCTTTGAGGAACCCTTCTGATCATTTCCTCAGGTGCATCAATTCTGATTTTGACAAAGTCAAGGCCACTCTTAAAGGGTCCATGAAATTGAGGTTCGAGGGAAGTGATGATCCTTTGGACAGGATCACTACTGCTGAAGCAATAAGAACCCTTATTGACTTCTACCGGACATCTCAGCACTCTTATGCTGCAGTACAAAAGGTGGACGAGATATCGAAAGTTAAGGGAACAGTGCTTGAAGCTGGAGGAAGTGAGGCTAGTTTCTTGATGCAGTCTTTCACTTTAACCAAACGTTCCTTCATCAACATGTCAAGGGACTTTGGCTACTACTGGCTAAGGCTTGTTATCTACATTGTGGTTACTATATGTATTGGAACCATTTATTTGAATGTGGGGACAGGCTACAACTCTATTCTGGCCAGAGGTTCTTGTGCATCTTTTGTCTTTGGTTTTGTCACCTTCATGTCAATTGGTGGATTCCCTTCATTTGTTGAAGACATGAAGGTTTTTCAAAGGGAGAGGCTTAATGGGCACTATGGTGTCAGTGCATTTGTCATCAGCAACACATTATCTGCAATGCCCTTCCTGATTTTGATCACTTTTCTCTCTGGAACCATTTGTTACTTCATGGTTCGCCTACACCCTGGCTTTTGGCATTACGTCTTCTTTGTGTTGTGCCTTTATGCCAGTGTCACAGTGGTTGAAAGCTTAATGATGGCTATTGCTAGCATTGTCCCCAACTTCCTCATGGGCATCATTATTGGAGCAGGAATTCAGGGCATATTCATGTTGGTCTCAGGCTACTTTAGGCTTCCACATGATATCCCAAAGCCAGTTTGGCGCTACCCTATGTCATACATCAGTTTCCACTTTTGGGCACTACAGGGTCAGTACCAGAATGATTTGAGGGGCTTACTATTTGACAACCAGACACCAGACCTTCCAAAGATACCAGGAGAATACATCTTGGAAAAAGTCTTCCAAATTGATGTCTACAGATCAAAGTGGATAAACCTGAGTGTGATCTTCAGCATGATTGTGATTTACCGCATTATTTTCTTCATTATGATCAAAATCAACGAGGATGTGACACCATGGGTTAGAGGGTACTTGGCTAGGAGGAGAATGCAGCAGAAGAGTGGAGCACAGAATACAACTATTGCACCTGATGTTCTCACTCAATCACCCTCTCTCAGAACCTATGTTTCAAAATGA 2070 0.4478 MEIEATSRPSGNGSTLPGLSPLSETLWREKANTEIFGDVSARLTWKDLTVMVTLSNGETQNVLEGLTGYAEPGTFTALMGPSGSGKSTLLDALSSRLAANAFLSGTILLNGRKAKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDNMPWSDKRALVESTIVAMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRALARDGRTVIASIHQPSSEVFELFDQLYLLSSGKTVYFGQASEAYEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLRFEGSDDPLDRITTAEAIRTLIDFYRTSQHSYAAVQKVDEISKVKGTVLEAGGSEASFLMQSFTLTKRSFINMSRDFGYYWLRLVIYIVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVSAFVISNTLSAMPFLILITFLSGTICYFMVRLHPGFWHYVFFVLCLYASVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSGYFRLPHDIPKPVWRYPMSYISFHFWALQGQYQNDLRGLLFDNQTPDLPKIPGEYILEKVFQIDVYRSKWINLSVIFSMIVIYRIIFFIMIKINEDVTPWVRGYLARRRMQQKSGAQNTTIAPDVLTQSPSLRTYVSK 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02988 689 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 43 280 IPR027417 -
Spst4g02988 689 SMART AAA_5 72 243 IPR003593 GO:0016887
Spst4g02988 689 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 43 286 IPR003439 GO:0005524
Spst4g02988 689 Gene3D - 37 281 IPR027417 -
Spst4g02988 689 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 32 664 - -
Spst4g02988 689 Pfam ABC-2 type transporter 376 582 IPR013525 GO:0016020|GO:0140359
Spst4g02988 689 MobiDBLite consensus disorder prediction 1 21 - -
Spst4g02988 689 MobiDBLite consensus disorder prediction 7 21 - -
Spst4g02988 689 ProSitePatterns ABC transporters family signature. 186 200 IPR017871 GO:0005524|GO:0016887
Spst4g02988 689 FunFam ABC transporter G family member 11 37 280 - -
Spst4g02988 689 CDD ABCG_EPDR 40 268 - -
Spst4g02988 689 Pfam ABC-2 type transporter 243 299 IPR043926 GO:0140359
Spst4g02988 689 Pfam ABC transporter 65 214 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02988 Spst-Chr4 69358719 69363750 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02988 73 274 Calmodulin-binding Proteins AT2G36910 31.925 7.30e-12 67.0