Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02977 ATGATTATACCAGTTCAATCATGTGTGCACTTTTCATGTCACATTTTTCTGATTTTGTCCTTCTTCCTTGTTCACACAAGCTCACAATCCTTGAGTGATCAAGAGCATGCACTTTTGCTTAAGATAAAGCAATACCTTGAAGACCCTCTTTTCCTCTCCCACTGGAATTCAACTTCCTCTCACTGTTCATGGCCAGAGATCACATGCACCACTGGATCAGTCACTTCTCTCACTCTCTCCCACTCCAACATCACCAAAATTATACCACCCTTCATTTGTGACCTCACCAACCTCACACACCTTGATTTCAGCTTCAACTTCATCCCTGGTGACTTCCCCACACCCCTCTACAACTGCTCCAAGTTGGAGTACCTAGACCTCTCCGGCAACAACTTTGATGGCAAGGTTCCTCGTGACATTGACCATTTGGGTGCTAATTTGCAATATCTCAACCTTGGTTCCACCAACTTCTATGGCGATGTTCCTGCTAGTATTGGAAATTTAAAGCAGCTGACACAGCTAAAACTTCAGTTTTGCTTATTGAATGGCACTGTTGCTGCTGAGATTGATAGCTTGTCCAATCTTGAGTACTTGGATTTGTCCTCTAACTTCCTCTTTCCTACGTGGAAATTGCCTTGGAACTTGACAAAATTCAACAAATTGAAGGTGTTTTATTTGTATGGCACCAACTTGGTTGGGGAAATCCCAGAGAACATTGGAGATATGGTGGCTTTAGAGAAGCTGGATGTGTCAAAAAATGGCTTAACTGGAGGAATTCCTAGTGGTTTGTTCTTGCTGAAGAATCTGACCTCAGTCTATCTTTTCGAAAACGGTCTCTCTGGTGAGATACCAAGTGTGGTTGAGGCATTGAACTTGGTCAACCTTGATCTTGCAAGGAACAATCTCACAGGGAAAATACCAGATGATTTTGGAAAGCTGCAACAGTTGTCATGGTTGAGTTTGTCTTTGAATGGTTTGTCAGGTGTGATACCAGAAAGCTTAGGCAATCTTCCAGCTCTCAATGATTTTCGTGTGTTTTTCAACAAATTATCAGGTACTCTTCCTCCTGATTTCGGCCGTTACTCAAAGCTTAAAACCTTTTTGATTGCATCTAATAGTTTTACTGGGAAGTTACCAGAGAACTTGTGCTATCATGGGATGTTACTAAACTTGTCTATTTATGAGAATAACTTGAGTGGTGAGTTGCCAGAATCACTAGGAAATTGCAGTAGTTTACTGGACCTGAAAGTTCACGAAAATAATTTTTCTGGTAACATTCCTAGTGGTCTTTGGACATCTTTCAATTTGTCAAATTTCATGGTGAGCCATAATAAGTTCACTGGTGTGCTTCCTGAAAGGCTATCTTGGAATGTTTCGAGGTTTGAGATAAGTTACAATCAGTTTTCTGGTACAATTCCAAGTGGAGTATCATCCTGGACTAATTTGGTTGTGTTTGATGCCAGTAAGAACTACTTCAATGGAAGTATTCCAAAAGAGCTAACAGCTCTTCCTAAGTTAACAACCTTGTTGCTTGATCAGAACCAACTCACTGGGACACTACCATCAGATATAATATCATGGAAATCCTTAGTAACTCTAAATTTGAGCCAAAACCACCTCTCTGGACAAATCCCTCATGCAATTGGTCAGTTACCTGTCCTCAGTCAACTTGATCTATCAGAAAATGAATTCTCTGGCCAAGTTCCCTCTCTACCTCCCAGACTCACCAATCTTAATTTGTCTTATAATCATTTGACTGGTAGGATTCCAAGGGAATTTGAAAATTCTGTGTACGCTAGTAGCTTTTTGGGCAATTCTGGTCTTTGTTCTGACACCCCAGCACTGAACCTTGCCTTGTGCAATTCTGGCCTTAAAAAAACAAGCAAAGGCTCATCTTGGTCTATTGGTTTGGTTATATGCTTGGTAGTAGTAGTAGCCTTTTTACTGGCCCTTTTAGCATCACTCTTGTTTATTAGATATCAAAGAAAGAGAAAGCAGGGATTAGATAACTCTTGGAAGCTCATTTCCTTTCAGAGGGTGAATTTCACAGAATCAACCATTGTCTCATCAATGACAGAACAAAACATTATTGGTAGAGGTGGATATGGTACAGTATATCGCATTGATGTTGGTTCAGACTATGTTGCTGTGAAAAAGATTTGGAATAACAGAAAGTTAGACAAGAAGCTTGAGAGCTCCTTCCGTGCGGAAGTGAGCATATTGAGCAACATTCGTCATACCAACATTGTGAGGTTGATCTGTTGTATCTCTAATGAAGATTCTATGCTCCTTGTATATGAGTATCTGGAAAATCACAGCCTAGATAAGTGGCTGCACAAGACGGTTAAGCCAGGTTCAGTTAATAAAGTGGTCCTTGATTGGCCAAAGAGGTTGAAAATAGCCATTGGGGTTGCTCAAGGTTTGAGCTACATGCACCATGACTGTTCACCACCTGTTGTTCACAGAGATATAAAAACAAGCAACATACTTTTGGATCCTCAATTCAATGCAAAAGTTGCTGATTTTGGACTAGCAAAGTTGTTAATCAAGCCAGAGCAACTTAACACCATGTCAGCTGTTATTGGCTCATTTGGCTATCTTGCTCCAGAATATGTGCACTCAACCAGAGTTAGTGAAAAGATAGATGTGTTCAGTTTTGGGGTGATTCTATTGGAACTGACAACCGGTAAAGAAGCAAGTTATGGAGACCAACACTCATCTCTTTCAGAGTGGGCGTGGCATCACATTCTGATTGGAGACAATGTTGAAGAACTGCTAGACAAAGATGTCATGGAAGCCAGTTACTTAGATGAAATGTGCACTGTTTTCAAACTTGGTATCATGTGCACTGCAACACTGCCTACTAGTAGGCCTACCATGAAGGACGCCCTACATATATTGCAAAGCTTAGGAGAACCATTATTTTATGGAGAGAAGAACTTTGGCTACTACTATGATGCTACTCCCCTTCTTAAGAATTCAAAGGAAACTAGCTAG 2997 0.4064 MIIPVQSCVHFSCHIFLILSFFLVHTSSQSLSDQEHALLLKIKQYLEDPLFLSHWNSTSSHCSWPEITCTTGSVTSLTLSHSNITKIIPPFICDLTNLTHLDFSFNFIPGDFPTPLYNCSKLEYLDLSGNNFDGKVPRDIDHLGANLQYLNLGSTNFYGDVPASIGNLKQLTQLKLQFCLLNGTVAAEIDSLSNLEYLDLSSNFLFPTWKLPWNLTKFNKLKVFYLYGTNLVGEIPENIGDMVALEKLDVSKNGLTGGIPSGLFLLKNLTSVYLFENGLSGEIPSVVEALNLVNLDLARNNLTGKIPDDFGKLQQLSWLSLSLNGLSGVIPESLGNLPALNDFRVFFNKLSGTLPPDFGRYSKLKTFLIASNSFTGKLPENLCYHGMLLNLSIYENNLSGELPESLGNCSSLLDLKVHENNFSGNIPSGLWTSFNLSNFMVSHNKFTGVLPERLSWNVSRFEISYNQFSGTIPSGVSSWTNLVVFDASKNYFNGSIPKELTALPKLTTLLLDQNQLTGTLPSDIISWKSLVTLNLSQNHLSGQIPHAIGQLPVLSQLDLSENEFSGQVPSLPPRLTNLNLSYNHLTGRIPREFENSVYASSFLGNSGLCSDTPALNLALCNSGLKKTSKGSSWSIGLVICLVVVVAFLLALLASLLFIRYQRKRKQGLDNSWKLISFQRVNFTESTIVSSMTEQNIIGRGGYGTVYRIDVGSDYVAVKKIWNNRKLDKKLESSFRAEVSILSNIRHTNIVRLICCISNEDSMLLVYEYLENHSLDKWLHKTVKPGSVNKVVLDWPKRLKIAIGVAQGLSYMHHDCSPPVVHRDIKTSNILLDPQFNAKVADFGLAKLLIKPEQLNTMSAVIGSFGYLAPEYVHSTRVSEKIDVFSFGVILLELTTGKEASYGDQHSSLSEWAWHHILIGDNVEELLDKDVMEASYLDEMCTVFKLGIMCTATLPTSRPTMKDALHILQSLGEPLFYGEKNFGYYYDATPLLKNSKETS 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02977 998 SMART LRR_typ_2 242 266 IPR003591 -
Spst4g02977 998 SMART LRR_typ_2 503 527 IPR003591 -
Spst4g02977 998 SMART LRR_typ_2 551 578 IPR003591 -
Spst4g02977 998 SMART LRR_typ_2 313 336 IPR003591 -
Spst4g02977 998 SMART LRR_typ_2 192 218 IPR003591 -
Spst4g02977 998 SUPERFAMILY RNI-like 54 351 - -
Spst4g02977 998 CDD STKc_IRAK 697 970 - -
Spst4g02977 998 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 188 288 - -
Spst4g02977 998 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 17 962 - -
Spst4g02977 998 SMART LRR_sd22_2 192 217 - -
Spst4g02977 998 SMART LRR_sd22_2 95 127 - -
Spst4g02977 998 Gene3D Phosphorylase Kinase; domain 1 670 768 - -
Spst4g02977 998 FunFam Kinase family with leucine-rich repeat domain-containing protein 769 980 - -
Spst4g02977 998 Gene3D Ribonuclease Inhibitor 34 145 IPR032675 -
Spst4g02977 998 FunFam Receptor-like protein kinase HSL1 isoform A 296 620 - -
Spst4g02977 998 Pfam Leucine Rich Repeat 194 215 IPR001611 GO:0005515
Spst4g02977 998 Pfam Leucine Rich Repeat 574 595 IPR001611 GO:0005515
Spst4g02977 998 Gene3D Ribonuclease Inhibitor 211 386 IPR032675 -
Spst4g02977 998 Gene3D Ribonuclease Inhibitor 387 626 IPR032675 -
Spst4g02977 998 Pfam Leucine rich repeat 74 132 IPR001611 GO:0005515
Spst4g02977 998 Pfam Leucine rich repeat 291 350 IPR001611 GO:0005515
Spst4g02977 998 Pfam Protein kinase domain 693 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g02977 998 Gene3D Ribonuclease Inhibitor 146 210 IPR032675 -
Spst4g02977 998 Pfam Leucine rich repeat N-terminal domain 33 69 IPR013210 -
Spst4g02977 998 Gene3D Transferase(Phosphotransferase) domain 1 769 974 - -
Spst4g02977 998 SUPERFAMILY RNI-like 289 594 - -
Spst4g02977 998 FunFam Receptor-like protein kinase HSL1 isoform A 32 183 - -
Spst4g02977 998 ProSitePatterns Protein kinases ATP-binding region signature. 697 719 IPR017441 GO:0005524
Spst4g02977 998 SMART serkin_6 691 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g02977 998 SUPERFAMILY Protein kinase-like (PK-like) 682 967 IPR011009 -
Spst4g02977 998 FunFam Receptor-like protein kinase HSL1 671 768 - -
Spst4g02977 998 ProSiteProfiles Protein kinase domain profile. 691 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g02977 998 ProSitePatterns Serine/Threonine protein kinases active-site signature. 819 831 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02977 Spst-Chr4 69268374 69271825 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02977 35 991 Receptor kinase-like Gene Family AT5G25930 51.959 0.0 955
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Spst4g02977 Pkinase 7e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02977 - - gmx:100813894 1674.45