Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02975 ATGGCAACCCCTCAAGTCATCACCTGCAAAGCTGCAGTGGCATGGGGAGCTGGGGAACCTCTGGTGATGGAGGAAGTGGAAGTCAGTCCTCCCCAACCAATGGAGATTAGGATTAAGGTTGTCTCCACCTCTCTCTGCCGCAGTGATCTCTCTGCTTGGGAATCTCATGCTATATTTCCTCGCATATTTGGCCATGAAGCATCAGGGATTGTAGAGAGCGTGGGACTGGGAGTGACTGAATTTAAAGAGGGTGACCATGTACTAACAGTATTCATTGGAGAATGCATGGCATGCAGACAGTGCACATCTGGAAAAAGTAACATTTGTCAAGTTTTAGGATTGGAAAGAAGGGGTCTAATGCATAGTGATCAGAAGACACGCTTCTCATTAAAAGGGAAGCCTGTTTATCATTATTGTGCTGTTTCAAGTTTCAGTGAATATACAGTAATCCATTCTGGATGTGCAGTGAAAGTCAGCCCCCATGCACCTCTTGAGAAAATTTGCCTTCTGAGCTGTGGGGTAGCTGCAGGTCTGGGTGCAGCATGGAATGTTGCTGATGTGTCAGAAGGATCAACTGTGGTGATTTTTGGTCTTGGAACTGTTGGCCTATCCGTTGCTCAAGCTGCAAAACTAAGAGGTGCATCTAGAATAATTGGTGTTGACAACAATCCACACAAGTGTGAAAATGCTAAAGCTTTTGGGGTTACTGAAGTTGTTGACACAAATTCCTATAAAGAACCTATTGCTCAGGTTATTAAGCACATTACTGATGGTGGAGCGGATTTCTCGTTCGAATGTGTAGGTGACACTGATATGATAACCACTGCATTGCAGTCATGCTGTGATGGGTGGGGTTTGACTGTAACACTTGGTGTGCCAAAGGCGAAGCCTGAGATGTCAGCTCATTATGGACTACTACTAATGGGAAGGACATTGAAAGGATCTCTATTTGGAGGATGGAAACCAAAATCTGATCTTCCTTCATTAGTAGAGAAGTATGTCAACAAGGAAATCCAGATTGATGACTACATAACACACAATTTGCCATTTGATGACATCAACAAAGCTTTCAATCTCATGAAGGAAGGAAAGTGTCTGCGTTGTGTTATTCACATGCCAAGATGA 1125 0.4382 MATPQVITCKAAVAWGAGEPLVMEEVEVSPPQPMEIRIKVVSTSLCRSDLSAWESHAIFPRIFGHEASGIVESVGLGVTEFKEGDHVLTVFIGECMACRQCTSGKSNICQVLGLERRGLMHSDQKTRFSLKGKPVYHYCAVSSFSEYTVIHSGCAVKVSPHAPLEKICLLSCGVAAGLGAAWNVADVSEGSTVVIFGLGTVGLSVAQAAKLRGASRIIGVDNNPHKCENAKAFGVTEVVDTNSYKEPIAQVIKHITDGGADFSFECVGDTDMITTALQSCCDGWGLTVTLGVPKAKPEMSAHYGLLLMGRTLKGSLFGGWKPKSDLPSLVEKYVNKEIQIDDYITHNLPFDDINKAFNLMKEGKCLRCVIHMPR 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02975 374 Gene3D - 177 315 - -
Spst4g02975 374 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 163 336 IPR036291 -
Spst4g02975 374 FunFam Alcohol dehydrogenase 6 12 192 - -
Spst4g02975 374 Gene3D - 12 367 - -
Spst4g02975 374 CDD alcohol_DH_plants 7 371 - -
Spst4g02975 374 PANTHER ALCOHOL DEHYDROGENASE 5 370 - -
Spst4g02975 374 FunFam S-(hydroxymethyl)glutathione dehydrogenase 177 315 - -
Spst4g02975 374 Pfam Zinc-binding dehydrogenase 201 324 IPR013149 -
Spst4g02975 374 SUPERFAMILY GroES-like 323 371 IPR011032 -
Spst4g02975 374 FunFam Uncharacterized protein 316 367 - -
Spst4g02975 374 Pfam Alcohol dehydrogenase GroES-like domain 34 154 IPR013154 -
Spst4g02975 374 SUPERFAMILY GroES-like 4 182 IPR011032 -
Spst4g02975 374 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 64 78 IPR002328 GO:0008270|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02975 Spst-Chr4 69257318 69262632 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02975 35 109 Monolignol Biosynthesis Gene Families AT2G21730 39.241 5.15e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02975 K00001 - gmx:100819938 726.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02975 4 69257318 69262632 Spst4g02975 4 69257318 69262632 ECH