Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02970 ATGGAACAAATAGCCCGTGAGGAATCGTTAAAAAACGCTTCGGATTTGGAGTGCGAGAAGGATCTCGAAGGCGATCATAAATCAATCGCATGCCCCACCCCTCAAAAGAACAATGAACCCTTGACGATCAAATCCAGAGAGGGACATACCAATGTTCCTGATAATTACTCTATGCTTGCAGATTTGTTTGGTCACATGAGTTGCTCACTCAGATTGTTGCGACTGTGCAAAAAGACTCCAACTTTTGAAAATGTTTACCGCCAGGTCGAAGTTCTGTCGAAGAGGGAATTATCCCATGCACATCTTGCGCAGATGAAGTATATACTGCCTGAAGGTGTATGTATAGATAAGGTGCTTGTTCATGACAAAAAAAGCTTGTGCATGGTGCCTGATATCTCGATCACCTTGAGATTCGAGATTGTGAAAAATTGCTGTGGTAAATCTGCTGATCTGTCTCTTCGGCGATATTTTAGATCTAAGCTGTTTGATTTTTTTTCCATGCATCCCGAGGTTTCTCATATTCCAGAAGCCCTGCTGCCAGGACCTTTTGGCAAGAAAACTTTTATCTTGAATTGTGAAAATTCAGATGCGATAGAATATTCAGACCAGTCTCTGGATTCAACGAAACTTGTGTCAGATTCCAATCAAAGCGAGACCTTGCAGGAGCAATTCCAGTTGTATCCGTCTTTTCGTAGGCATTTCTCCGGGAAGAATATTGTATACCAGGCAGAAAGGGAGCAGGGGCTTTCATCCACAAAAACTTATCCATCATCACATGTGGAAAACGAAGAAAGTGAAAAGGGACTGCAGAAAGGAAGTGTACCATTATCTGATCAAGTGGATCACCAGAAGGAATCTTTTTCTACGACTTTTCAAACTAATGTTGTTAATACACCGGTACATATGATCCGTCCTTTACATTCTGTTACTTGCAGTAATTCTGAAACCCCAGATATGAAAAATATCTCCTGCACCGCTGATAGTTTTATGACCGAAACTCCTGCCCAGTTAGCACCTGCAAGATTATTGCCTGTTTCTGATGTTAAGCTTCAGGACATGCCTATCCAAGTTTTATCGGCGTGTCATAAGCCAGCAAAAAGAGTGCTTGACTTTTCACTCATGGAGGATAATAATGGCTTGGGCATTAGAGTACAGAAGTTTGAATCTATCATAGCTCTGCGTGAAAGTGATAGCTTTCCCGAATCTAGTCGAGAATGTGCGCAGTATTGCTGCAAGTCTGTTAGTTCTGCCTTTGTACCTCAAGAGGCAGAAGGACGCCTTGGATACTCTTTTGAGAAGATCACCCAAAAGCAAGCTGGTTTAGATACACTGAATGAAAAATCTTCACCGATGCTGAATCTGGTTAATGTGATTCACTCTATATTTCAATCTGTCCAAAGAATTCTAATCACAAAAGAGGAGCTCCTGCATAAGATCCTTATGAACAGTTTCGATGTTGTTGAGATTAGAGAAGTTGAAGAACAAATTGAATCTTTGGAAAAGTTGGTCCCAGACTGGATCTGCAAGAAATTGGTTCCTACAGGAGATACTGTATACTGCATCAATAAAATGTCAGATTTGGACTCAGTACGATCAAGGGTTGCCCGCAACGAGACTGTTCGAGAGAAGGGCTTTTACTGA 1641 0.415 MEQIAREESLKNASDLECEKDLEGDHKSIACPTPQKNNEPLTIKSREGHTNVPDNYSMLADLFGHMSCSLRLLRLCKKTPTFENVYRQVEVLSKRELSHAHLAQMKYILPEGVCIDKVLVHDKKSLCMVPDISITLRFEIVKNCCGKSADLSLRRYFRSKLFDFFSMHPEVSHIPEALLPGPFGKKTFILNCENSDAIEYSDQSLDSTKLVSDSNQSETLQEQFQLYPSFRRHFSGKNIVYQAEREQGLSSTKTYPSSHVENEESEKGLQKGSVPLSDQVDHQKESFSTTFQTNVVNTPVHMIRPLHSVTCSNSETPDMKNISCTADSFMTETPAQLAPARLLPVSDVKLQDMPIQVLSACHKPAKRVLDFSLMEDNNGLGIRVQKFESIIALRESDSFPESSRECAQYCCKSVSSAFVPQEAEGRLGYSFEKITQKQAGLDTLNEKSSPMLNLVNVIHSIFQSVQRILITKEELLHKILMNSFDVVEIREVEEQIESLEKLVPDWICKKLVPTGDTVYCINKMSDLDSVRSRVARNETVREKGFY 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02970 546 PANTHER DNA REPLICATION FACTOR CDT1 34 536 IPR045173 GO:0003677|GO:0030174|GO:0071163
Spst4g02970 546 Coils Coil 489 509 - -
Spst4g02970 546 Gene3D - 443 540 IPR038090 -
Spst4g02970 546 FunFam CDT1-like protein a chloroplastic 440 538 - -
Spst4g02970 546 Pfam DNA replication factor Cdt1 C-terminal domain 451 507 IPR032054 -
Spst4g02970 546 SMART CDT1_2 52 181 IPR014939 -
Spst4g02970 546 MobiDBLite consensus disorder prediction 246 280 - -
Spst4g02970 546 SUPERFAMILY "Winged helix" DNA-binding domain 45 183 IPR036390 -
Spst4g02970 546 Pfam DNA replication factor CDT1 like 53 113 IPR014939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02970 Spst-Chr4 69222147 69224558 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02970 454 534 Core DNA Replication Machinery Family AT2G31270 45.679 1.01e-17 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02970 K10727 - gmx:102670055 736.487