Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02954 ATGCCAACACCCTCTTCCCATGCTTTCACCTACGATGTCTTCCTCAGCTTTAGAGGGGAAGACACCCGCTATGGTTTCACTGGCAATCTCTACAAAGCTCTTAGTAACAAGGGAATTCACACTTTTATTGATGATGAGAAGCTTCAAAGCGGAGAGGAAATAACAGCAGCACTTGTGAAGGCAATTGAAGAGTCTAGAATTGCAATCGTTGTGCTCTCTAACAACTATGCTTCATCCTCATTTTGCTTAGATGAACTTGCAGTCATCCTTGACTGCAAGAGTAAAGGGCTGTTGGTTATACCGGTCTTTTATAAGGTGGATCCTTCTCATGTGAGACACCAGAAAGGTAGTTATGGAGAAGCCTTGGTTAAGCATCAGAAAAGGTTCAAAGCTGAGAAGGAGAAGTTGCAGAAATGGAAGATGGCTTTGCGTCAAGTAGCTGATTTCTCTGGCTATCATTTCATAGATGGAGATGAATATGAATACAAGTTTATTGCGAGGATTGTTGAGCGGGTCTCCAGGGAGATTAATCGTGCGCCTCTATATGTTGCGGATTACCCAGTTGGCCTAGTGTCACAAGTGCTAGAAGTCAAGAAACTTTTGGATGTTGGATCTGATGATGTTGTCCACATGATAGGGATCCATGGAATGGGTGGGATAGGAAAAACAACACTTGCTCTAGCCGTGTATAATTTGATTGCTGATGATTTTGATGGTTCATGTTTTCTTCAAAATGTAAGAGAAGAATCGAATAAACATGGAATGAAACACCTCCAGAGCATCCTTCTTTCAGAAATACTTGGAGAAAAGGACATCAACTTAGCAAGTGTGCAACGAGGAATTTCAGTGATACAACAGAGGCTCCAGCGGAAAAAAGTTCTCTTGATTCTAGATGATGTTGACAAGCGCAAACAATTACAAGCACTTGTTGGAAGATCTGATTGGTTTGGTTCCGGAAGCAGAGTTATCATTACCACTCGGGACTGGCAACTGCTAAAATCTCATGAGGTTAAAAGAACCTATGAGGTGGAGGAAATGAACAAGAATGATGCTCTTCAATTGCTTATATGGAATGCTTTCAAAGGGGAAAAAGTTGATCCAAGTTACCAACACGTCTTGAAACGTGTAGTAACTTACGCTTCTGGCCTTCCCTTGGCTTTAGAAGTAATAGGTTCCAACTTGGTTGGAAAAAGTTTAGAAGAATGGGAATCTGCTATTGAACATTACAAAAGAATTCCTAATGACGAAGTCCTAGATATACTTAAAGTAAGCTTTGATGCTCTGGGCGAAGAAGAAAAAAATGTTTTTCTTGACATCGCTTGTTGCTTGAAAGGATGTGATTTGACAGAAGTTGAACTTATACTTCGTGCTCTTTATGATAACAACATGAAACATCATATTGGGGTGTTGGTCGAAAAATCTCTCATAAAGATTTGGCCTGGTATGCGTAGTGTAGTTGAAATGCATGACTTGATACAAGATATGGGTAGACAAATTGACCAGCAAGAATCACCCAAAGAACTAGGGAAGCGCATGAGGTTATGGTTATCGAAAGATATAATTCAAGTTTTGAAAGACAACACGGGAACTAGCAAAATTGAAATCATATGTCTGGATTTGTCTATATGCGAGAAAGAAGAAACACTAGAATGGAATGGAAACGCCTTCAAAAAGATGAAAAACCTTAAAATACTTATTATAAGAAATGGTAAATTTTCCAAAGCTCCCAATTATTTTCCAGAAAGTTTGAGAGTACTGGAATGGCATGGATACCCTTCAAATTGTTTACCATCAAATTTCCATCCAAACAAACTCGTCATCTGCAAGTTAACTGACAGTAGCTTTAGGTCATTTGGGTTCCATGGCTCATCGAAGAAATTCGAGAATCTAACTGTTATGAATTTCGACCAGTGCAATTTTTTAACACAAATACCTGATATGTCTGATCTCCCAAATTTGGAGGAAGTTTCATTTAAAAATTGTGAGAGTTTAATTGAAGTACATGACTCAATTGGTTTTATGACTAAACTTAAAACATTGAGTGCGGAAGGTTGCACCAAGCTTATGAGTTTTCCACCTCTCAACTTGACCTCTCTTGAAAGACTAGAACTTTCATATTGTTCCAGTCTTGAGAATTTTCCAGAAATATTAGGAAAGATGGGAAACATAAGAGTACTTGAATTGGAGGAGCTTCCCATAAAAGAATTGCCAGTTTCATTTCAAAATCTTATCGGACTCGAAGATTTACATCTGTCATGTGAAATTATTCACTTACCAAGTAGCATTGCCTCGATGCCTGAATTGTGTGATTTTAGTGTTACTAATTGCAAAGGGTGGCAATGGGTAAAATCAGAAGAGGGTGAAGATAAAGTAGGTTCAATGGTTTCTTCAAATGTAGATTGGTTTTCGGCCTTGTCTTGCAACCTGGATGATAACTTTTTTTCAGCAGGGTTCATGCAGTTGGCACAAGTGCGTAGTTTATTTCTACGGGAAAATAACTTCACATTCCTTCCTGAATGCATCAAAGAATTTCACAACCTCTACACTCTTGATGTGAGTCATTGCAAGCATCTTCAAGAAATTAGAGGGTTTCCACCAAAATTAAGACGTTTCAAGGCAATAAACTGTATATCCTTGACTTCCTCGAGTTCAAGCATGCTGCTAAATAAGCAATTGCACGAGGCTCGAGAAACTGAGTTTTGGTTTCCAGGAACAAGTATTCCGGAGTGGTTTGATCACCGAAGTAGTGGACCTTCTTGTCGTTTCTGGTTTCGTAATAAGTTTTCTGCTAAGGTTCTTTCTCTTCTAATTGCACCTGTGGGAGATAAACATGGCTTTGATTTGATTAGACCTATGGTGTTCATTGATGGTAAAGCTCAAGAATCACCATTTTTTCGTTACAGGAAAATAGTGAGGATGTTTGAATTGGATCAAACATACCTCTTTGATCTAGAAGTACATGTCTATAGTAATTTGTTTAAACTACCATTAGAGAAGGAGTGGAAGCATGTGGAGATCACATATGAAGGTGTGATAGAGACCTCAATTGTTAAAGCAACTGGAATCCATGTATTCAAAGAGGAAAGCAGCAACATGGAGGACATTAGGTTTGATAATCCTTATAGCAACAAAGAAGTAGTCAAAGATCTCAACAGTTCTGAATCACAAAACTACTCCTTGTTAAAAAGCATAGGTTTGTGCAGTTGCAAACTTTTCATAGGTTTTTTTCTTTTGTTTTCATGCTTTTATTTTTTTTATTTTATTCACTAG 3270 0.3823 MPTPSSHAFTYDVFLSFRGEDTRYGFTGNLYKALSNKGIHTFIDDEKLQSGEEITAALVKAIEESRIAIVVLSNNYASSSFCLDELAVILDCKSKGLLVIPVFYKVDPSHVRHQKGSYGEALVKHQKRFKAEKEKLQKWKMALRQVADFSGYHFIDGDEYEYKFIARIVERVSREINRAPLYVADYPVGLVSQVLEVKKLLDVGSDDVVHMIGIHGMGGIGKTTLALAVYNLIADDFDGSCFLQNVREESNKHGMKHLQSILLSEILGEKDINLASVQRGISVIQQRLQRKKVLLILDDVDKRKQLQALVGRSDWFGSGSRVIITTRDWQLLKSHEVKRTYEVEEMNKNDALQLLIWNAFKGEKVDPSYQHVLKRVVTYASGLPLALEVIGSNLVGKSLEEWESAIEHYKRIPNDEVLDILKVSFDALGEEEKNVFLDIACCLKGCDLTEVELILRALYDNNMKHHIGVLVEKSLIKIWPGMRSVVEMHDLIQDMGRQIDQQESPKELGKRMRLWLSKDIIQVLKDNTGTSKIEIICLDLSICEKEETLEWNGNAFKKMKNLKILIIRNGKFSKAPNYFPESLRVLEWHGYPSNCLPSNFHPNKLVICKLTDSSFRSFGFHGSSKKFENLTVMNFDQCNFLTQIPDMSDLPNLEEVSFKNCESLIEVHDSIGFMTKLKTLSAEGCTKLMSFPPLNLTSLERLELSYCSSLENFPEILGKMGNIRVLELEELPIKELPVSFQNLIGLEDLHLSCEIIHLPSSIASMPELCDFSVTNCKGWQWVKSEEGEDKVGSMVSSNVDWFSALSCNLDDNFFSAGFMQLAQVRSLFLRENNFTFLPECIKEFHNLYTLDVSHCKHLQEIRGFPPKLRRFKAINCISLTSSSSSMLLNKQLHEARETEFWFPGTSIPEWFDHRSSGPSCRFWFRNKFSAKVLSLLIAPVGDKHGFDLIRPMVFIDGKAQESPFFRYRKIVRMFELDQTYLFDLEVHVYSNLFKLPLEKEWKHVEITYEGVIETSIVKATGIHVFKEESSNMEDIRFDNPYSNKEVVKDLNSSESQNYSLLKSIGLCSCKLFIGFFLLFSCFYFFYFIH 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02954 1089 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 152 IPR035897 -
Spst4g02954 1089 SUPERFAMILY L domain-like 548 889 - -
Spst4g02954 1089 ProSiteProfiles TIR domain profile. 9 176 IPR000157 GO:0007165
Spst4g02954 1089 Gene3D - 182 341 IPR027417 -
Spst4g02954 1089 Gene3D Ribonuclease Inhibitor 497 785 IPR032675 -
Spst4g02954 1089 Pfam TIR domain 11 176 IPR000157 GO:0007165
Spst4g02954 1089 Pfam NB-ARC domain 196 410 IPR002182 GO:0043531
Spst4g02954 1089 SMART till_3 10 149 IPR000157 GO:0007165
Spst4g02954 1089 Gene3D - 345 429 IPR042197 -
Spst4g02954 1089 SMART AAA_5 208 350 IPR003593 GO:0016887
Spst4g02954 1089 Gene3D Ribonuclease Inhibitor 786 912 IPR032675 -
Spst4g02954 1089 PRINTS Disease resistance protein signature 694 710 - -
Spst4g02954 1089 PRINTS Disease resistance protein signature 380 394 - -
Spst4g02954 1089 PRINTS Disease resistance protein signature 211 226 - -
Spst4g02954 1089 PRINTS Disease resistance protein signature 287 301 - -
Spst4g02954 1089 Gene3D - 5 181 IPR035897 -
Spst4g02954 1089 SUPERFAMILY "Winged helix" DNA-binding domain 415 525 IPR036390 -
Spst4g02954 1089 FunFam Disease resistance protein (TIR-NBS-LRR class) 7 178 - -
Spst4g02954 1089 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 878 IPR044974 GO:0006952
Spst4g02954 1089 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 439 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02954 Spst-Chr4 69149793 69153662 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02954 2 776 WRKY Transcription Factor Family AT4G12020 30.250 1.86e-78 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02954 - - var:108344036 1667.51