Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02944 ATGTCTTCTGCCGGCGGCGACGGTACCTCCGGCGAGCCTCGCCAATACTTCTGCCACCAGTGCAACGACACCGTCACCGTTACCCCTTCCCCCTCCTCCGATCTCCTCTGCCCCAATTGCAACGACGGCTTCCTCGAAGAACTCGATATCCCTAACCCTAACCCTAACCCGCCCAATCCCTTCTTCGCCGACGTTCCCCTCGCCGGGACCACCGCCATTCCCTTTCTTTTCCCCGGAGCCGCCGGCCAGTCCGTCGACGATCTCTCCAATCTCTTCGGCACCCGATCTGACGCCAGCCCCGCCGAGGCCTTCAGCCCCTTGGTCTTCCTCCAGAACTACTTCCAAACCCTAAGGGCGGGCGGCGGGAACCTCCAACTCGTGATCGAGTCCGGCGACCCCGGCGGAGCGTTCCGGTTCCCTGGCATCACCCATGGCGACTACTTCTTCGGGTCGGGCCTCGAGGAGCTGATCCAGCACCTCGCCGAGAACGATCCGAACCGCTACGGCACCCCACCGGCTTCTAAGACGGCTGTGGAAGGACTGCCGGACGTCTCGGTCACAGAGGAGCTTCTGGCGTCGGATTGCTCGCAGTGCGCCGTGTGCAAAGACGCGTTCGAACTTGGTGACACCGCGAAGCAGATGCCCTGTAAGCATATATATCACGGGGATTGCATTTTGCCTTGGTTGGAATTGCATAATTCCTGTCCCGTTTGTCGGTATGAGTTGCCAACAGATGATCCTGATTATGAGCAGAGGGCTGCCCGTGGTGGCGGTGGCAGTAGTGGAGGTGGAAGTGGTGGTGCCGGCAGCGGGCCAGCTACCCAGGTGAATTGGAACCTGGCTGTGGGGCCTGGTGGTTCTCCTGATTCGCCTGTTGACGGAGACAATTCGCAGCGGAGGAGGTTTAGGGTGTCTTTGCCATGGCCCTTTAGGCAATTTGTTTCTTCTGGTGCAGAGACAAGTAATGTTGGTGGAGCCGGCGATGATGACAACAGTAATAGCAATAGTGGGGGGAATAATGGTGGGCAGTCGAATTCTGGAAACAGGGGGAATCAGAATTTTGAGTCGGAGACCAGACAGGAAGATCTCGATTGA 1095 0.5863 MSSAGGDGTSGEPRQYFCHQCNDTVTVTPSPSSDLLCPNCNDGFLEELDIPNPNPNPPNPFFADVPLAGTTAIPFLFPGAAGQSVDDLSNLFGTRSDASPAEAFSPLVFLQNYFQTLRAGGGNLQLVIESGDPGGAFRFPGITHGDYFFGSGLEELIQHLAENDPNRYGTPPASKTAVEGLPDVSVTEELLASDCSQCAVCKDAFELGDTAKQMPCKHIYHGDCILPWLELHNSCPVCRYELPTDDPDYEQRAARGGGGSSGGGSGGAGSGPATQVNWNLAVGPGGSPDSPVDGDNSQRRRFRVSLPWPFRQFVSSGAETSNVGGAGDDDNSNSNSGGNNGGQSNSGNRGNQNFESETRQEDLD 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02944 364 ProSiteProfiles Zinc finger RING-type profile. 198 239 IPR001841 -
Spst4g02944 364 SUPERFAMILY RING/U-box 179 245 - -
Spst4g02944 364 CDD RING-H2_RNF126-like 197 239 - -
Spst4g02944 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 245 IPR013083 -
Spst4g02944 364 MobiDBLite consensus disorder prediction 314 354 - -
Spst4g02944 364 SMART ring_2 198 238 IPR001841 -
Spst4g02944 364 FunFam E3 ubiquitin-protein ligase RING1-like 159 245 - -
Spst4g02944 364 MobiDBLite consensus disorder prediction 249 364 - -
Spst4g02944 364 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 83 243 - -
Spst4g02944 364 MobiDBLite consensus disorder prediction 267 281 - -
Spst4g02944 364 Pfam Ring finger domain 197 239 IPR001841 -
Spst4g02944 364 Pfam zinc-ribbon 15 48 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02944 Spst-Chr4 69061033 69062127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02944 98 251 C3H Transcription Factor Family AT5G01980 40.625 8.40e-34 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02944 K11982 - gmx:100784504 525.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02944 4 69061033 69062127 Spst4g02944 4 69061033 69062127 ECH