Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02943 ATGGCAACACCCTCTTCCCATGCTTTCACCTACGATGTCTTCCTCAGCTTTAGAGGGGAAGACACACGTTATGGTTTCACTGGCAATCTCTACAAAGCACTTCGTGGCAGAGGAATTCGCACTTTCATAGATGATGAGGCCCTTCCGAGCGGAGAAGAAATAACACCGGCACTTATGAAGGCAATTCAAGAGTCCAAGATTGCCATCACCGTGCTCTCTCAGAACTATGCTTCTTCCTCATTCTGCTTAGATGAACTTGCTGCCATCCTTGACTGCAAGAGTAAAGGGCTATTGGTTATACCTGTCTTTTATAACGTCAACCCTTCTGATGTCAGACACCAGAAAGGTAGTTATGGAGAGGCATTGATTATGCATGAGAAAAGGTTCAAAGCTGAGGAGAAGTTGCAGAAATGGAAGATGGCTCTGCATCAAGTAGCTAACTTCTCTGGCTATCACTTCCAACACGGCTATGAAGGTTTGGAGGAAGAAGAGAAGAGTGTTTTTCTTGATATTGCGTGTTGCTTCAAAGGATATGCATTGACAGAAGTTGAGGACATGCTTCTTGCTCTTTATGACGACTGCATGGAACATCATATCGGTGTGCTGGTCGAAAAATCTCTCATAAAGGTTAGTGCGAACATGCATAGTACAGTTGAAATGCACGACCTGATTCAGGACATGGGTAGACAAATTGACCAGAAAGAATCACCGAAAGAGCCAGGGAAGCGCAGGAGATTATGGTTACCGAAAGATATAATTCAAGTTTTAAAAGGAAAAACTGGAACAAGTCAAATAGAAATCATATGTTTGGATTTCTTCATTTCTGAGAAAAAAGAAACAGTAGAATATAACGAAAACACCTTCATGGAGATGGAAAACCTTAAAATACTTATTGTTAGAAATGCTAAGTTTTCCAAAGGTCCCAATTATCTTCCAGAAATTTTGAAGTGGTTCGAGAATCTAACCATCTTGAACTTTGACCACTGCGAACTTTTAACACAGATACCTGACGTTTCTAATCTCCCAAATTTGGAGGAACTTTCATTTGAAGGGTGTGAGAGTTTAATTACAGTTCACGACTCAGTTGGTTTTATGGATAAACTTAAAATATTGAATGCTGAATTGTGCAGCAACCTAAAGAGTTTTCCTAATCTCAACTTGACCTCTCTTGAAAGACTAAAACTTTCTTTTTGTTCCAGTCTTGAGAATTTTCCGGAAATATTAGGAAAGATGGAAAACATAAAGAAACTTGATCTGTATGACCTTCCGGTAAAAGAATTGTCAAATTCATTTCAAAATCTTTCTGGACTCCAAGAGTTTTACGTGGAGTGTGATGTTCTTCAGTTAAGTAGCATTGCCTTGACGCCTGAACTGTGTGATCTGATCATTGGTAATTGCAAGGGGTGGCAATGGTTGGCTCAAGTGACATTTTTATCACTGAGGAAGAGTAATATCACATTCCTCCCCGAATGCCTCAAAGAATTTCACAACATGTATCATCTTGACGTGAGTGATTGCAAAAAACTTCAGGAAATTAGAGGGGTTCCACCAAACTTAAAACATTTCAGGGCAATAAACTGTATATCCTTGGCTTCCTCGGGTTCAAGCATGTTGCTAAATCAGCAACTTCACGAGGCTGGAGTTGAAGTTACTGAGTTTGTCTTTCCTGGAGGAAGTATTCCAGAGTGGTTCGATTTTCAAAAGAGGGGACCTTCAATTTCTTTCTGGTTTCGAAATGAATTCCCTGCCAAAGTTCTTTGTTATCTTATTGCACCAGTACTAGGAGCTCTTTCCCATTTGGTTACACCCAAGGTGATCATTAATGGTGTTGAAGAATTTCGTTTTGGACGCCTAAAGGAAGCCGAAGTGAGGACGTCGGAATTGGATTATACACATCTCTTTAAACTTGAAAAAGGAATCCATTTTGGATTGCCTTTGGAAAAGGAATGGAGCCATGTGAAGATTAAATATAAAGAAGATTTGTTTGATACCTCACTCATTAAAGCAATGGGAATCCATGTAGTGAAAGAGGACAGCATGAGCATGGAGGACATTCGATGCGATGATCCTTACATCAACTCAAAACAACACAATCATCTTAACACCAAGTTATTTTCCAGAAAGTTTGAAGGTACTGGAATGGCCGGATATCCTTCAAATTGTTTACCATCTAATTTTCATACCACCAATCTTGTCATATGCAAGTTACCTGGCCTTTGCATTATGTCGTTGGGAGGGAGTATTCCAGAGTGGTTCGATTTTCAAAAGAGGGGACCTTCAATTTCTTTCTGGTTTCGAAATGAATTCCCTGCCAAAGTTCTTTGTCAACTTATTGCACCAGTAGGAAGACCTGCACCAAGGCCTTTCTATTTGGTTATTAGACCCATGCAGTTCATCAATGGAAAGAAGCGAGGATGTTGA 2421 0.3998 MATPSSHAFTYDVFLSFRGEDTRYGFTGNLYKALRGRGIRTFIDDEALPSGEEITPALMKAIQESKIAITVLSQNYASSSFCLDELAAILDCKSKGLLVIPVFYNVNPSDVRHQKGSYGEALIMHEKRFKAEEKLQKWKMALHQVANFSGYHFQHGYEGLEEEEKSVFLDIACCFKGYALTEVEDMLLALYDDCMEHHIGVLVEKSLIKVSANMHSTVEMHDLIQDMGRQIDQKESPKEPGKRRRLWLPKDIIQVLKGKTGTSQIEIICLDFFISEKKETVEYNENTFMEMENLKILIVRNAKFSKGPNYLPEILKWFENLTILNFDHCELLTQIPDVSNLPNLEELSFEGCESLITVHDSVGFMDKLKILNAELCSNLKSFPNLNLTSLERLKLSFCSSLENFPEILGKMENIKKLDLYDLPVKELSNSFQNLSGLQEFYVECDVLQLSSIALTPELCDLIIGNCKGWQWLAQVTFLSLRKSNITFLPECLKEFHNMYHLDVSDCKKLQEIRGVPPNLKHFRAINCISLASSGSSMLLNQQLHEAGVEVTEFVFPGGSIPEWFDFQKRGPSISFWFRNEFPAKVLCYLIAPVLGALSHLVTPKVIINGVEEFRFGRLKEAEVRTSELDYTHLFKLEKGIHFGLPLEKEWSHVKIKYKEDLFDTSLIKAMGIHVVKEDSMSMEDIRCDDPYINSKQHNHLNTKLFSRKFEGTGMAGYPSNCLPSNFHTTNLVICKLPGLCIMSLGGSIPEWFDFQKRGPSISFWFRNEFPAKVLCQLIAPVGRPAPRPFYLVIRPMQFINGKKRGC 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02943 806 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 152 IPR044974 GO:0006952
Spst4g02943 806 SMART till_3 10 148 IPR000157 GO:0007165
Spst4g02943 806 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 151 IPR035897 -
Spst4g02943 806 Gene3D Ribonuclease Inhibitor 274 410 IPR032675 -
Spst4g02943 806 Gene3D - 5 173 IPR035897 -
Spst4g02943 806 Pfam TIR domain 11 144 IPR000157 GO:0007165
Spst4g02943 806 Gene3D Ribonuclease Inhibitor 411 544 IPR032675 -
Spst4g02943 806 SUPERFAMILY L domain-like 220 527 - -
Spst4g02943 806 FunFam Disease resistance protein (TIR-NBS-LRR class) 7 172 - -
Spst4g02943 806 ProSiteProfiles TIR domain profile. 9 171 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02943 Spst-Chr4 69053023 69059533 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02943 153 443 WRKY Transcription Factor Family AT4G12020 32.857 4.14e-31 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02943 - - vun:114181898 645.195