Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02942 ATGACAACTCCAAGTTCCCGTGCATTCACGTATGATGTGTTCCTCAGTTTTAGAGGGGAAGACACGCGTTATGGTTTCACTGGCAATCTCTACAAAGCTCTTAGTAACAAAGGAATTCACACTTTCATTGATGATGAAAAGCTTCGAAGCGGAGAGGCAATAACAACAGAACTTGTGAAGGCAATTGAAGAGTCAAGGATTGCCATCATTGTGCTCTCTAACAACTATGCTTCTTCCTCATTTTGCTTAGATGAACTTGTAGTCATCCTTGACTGCAAGAGTAAAGGATTGTTGGTTATACCGGTCTTTTATAAGGTGGATCCTTCTCATGTGAGACACCAGAAAGGTAGTTATGGAGAAGCCTTGGCTAAGCATCAGAAAAGGTTTAAAGCTGAGAAGGAGAAGTTGGAGAAATGGAAGATGACTCTGTATCAAGTAGCTGGCTTCTCTGGCTATCACTTCCAAGACGGAATTGGATATGAATACAAGTTTATTGGAAGGATTGTTGAGAAGGTCTCTATGGAGATTAATCCTGCTCGTTTACATGTTGCGGATTACCCAGTTGGACTTGGATCACAAGTGCTAGAAGTCAGGAAGCTTTTAAATGCTGAATCTTGTGATGGATTCAAAATGATAGCGATGTATGGAATGGGTGGGATAGGAAAAACAACACTCGCTCTAGCAGTTTATAATTTGATTGCTGCCTGTTTCGATGGTTCTTGTTTTCTGCAAAACGTGAGAGAGAAATCAAACAAACATGGGCTAGAACACCTCCAAAGAATCCTTCTTTCAAAAATACTTGGAGAGAAGGACATCAACTTAGCAAGTGAGCATGAAGGAATTTCAATGATACAACAAAGGCTGCAGCGAAAGAAGGTTCTTTTGATTCTTGATGACGTTGACAAGTGTTCGCAGTTACAGGCACTGGTTGGAAGTCCTGATTGGTTTGGTCCTGGCAGCAGGGTTATCCTCACAACTCGAGATACACAACCTCTGGCATCCTATGAGGTTAAAATAACATATAAAGTGAAGAAATTGAATAAAAACGATGCCTTTCAGTTGCTTACATGGAAAGCTTTTAAAACGGAACAATTTGATCCAAGTTATGTGGAGGTCCTGAATCAAGTAGTAACTTATGCTTCTGGCCTTCCGTTGGCTTTGGAAGTAATTGGTTCCAACCTGTTTGCAAAAAGTGTTGAACAATGGAAATCGGCTATCAATCAATATCAAAGAATTCCTAATAATCAAATCCTAGAGAAACTTAAAATAAGCTTTAAAGCATTGGAGGAAGAAGAGAAAAGTGTTTTTCTTGACATTGCTTGTTGCTTCAGAGGATATAAACTGGCAGAGGTTGAAATTTTACTTCGTGCTCTTTATGATGACTGCATGAAACATTATATTGGGGTGTTGATTGAAAAATCTCTCATAAATGTTAGTCGGCGTGGTACAGTTGAAATGCACGACCTGATTCAGGACATGGGTAGACAAATTGACCAGAAAGAATCACCGAAAGAACCAGGGAAGCGCAGGAGATTATGGTTACCAAAAGATGTCATTCATGTTTTAAAAGACAACAATGGAACAAGTCAAATAGAAATCATATGGTTGGATTTCTTCATTTCTGAGAAAAAAGAAACAGTAGAATGTAATGAAAACACCTTCATGGAGATGGAAAACCTTAAAATACTTATTATACCTGACGTATCTTATCTCCCAAATTTGGAGGAACTTTCATTTGAAGGGTGTGAGAGTTTAATTGCAGTTGATGACTCAGTTGGTTTTATGTCTAAACTTAAAATATTGAATGCTAAAGGTTGTAGCAAGCTATTGAGTTTTCCACATCTCCACTTGACCTCTCTTGAAAGACTAGAACTTTCTTTATGTTCCAATCTAAAGAATTTTCCAAAAATATCAAGAAAGATGGGAAACATAAGGAAACTTAGCTTGAATGAACTTCGCATAGAAGAATTACCAGTTTCATTTCAAAATCTTACTGGCCTCGAAGAGTTATGCATTAACTGTGATTTTCTTAGGTTAAGTCCCATTGTCTTGACGCCTGAACTGTTTGATATTAATATTTATAACTGCAAGGAGTGGCAGTGGGTAAATTCAGAAGAGGGTTTCGCGTTGTTGGCTCGAGTGAGTATTTTAGAACTATGGGGAAGTAATGTCACGTTCCTTCCTGAATGCATCAAAGAATTTCACAATCTGTTTTCTCTTAATGTGAGTGATTGCAAGCGTCTTAAGGAAATTAGAGGGGTTCCACCAAACTTGAAACGTTTCAGGGCAATAAACTGTATATCCTTGACTTCCTCGGGTTCAAGCATGTTGTTAAATCAGGTTTTGTGTTGA 2352 0.3835 MTTPSSRAFTYDVFLSFRGEDTRYGFTGNLYKALSNKGIHTFIDDEKLRSGEAITTELVKAIEESRIAIIVLSNNYASSSFCLDELVVILDCKSKGLLVIPVFYKVDPSHVRHQKGSYGEALAKHQKRFKAEKEKLEKWKMTLYQVAGFSGYHFQDGIGYEYKFIGRIVEKVSMEINPARLHVADYPVGLGSQVLEVRKLLNAESCDGFKMIAMYGMGGIGKTTLALAVYNLIAACFDGSCFLQNVREKSNKHGLEHLQRILLSKILGEKDINLASEHEGISMIQQRLQRKKVLLILDDVDKCSQLQALVGSPDWFGPGSRVILTTRDTQPLASYEVKITYKVKKLNKNDAFQLLTWKAFKTEQFDPSYVEVLNQVVTYASGLPLALEVIGSNLFAKSVEQWKSAINQYQRIPNNQILEKLKISFKALEEEEKSVFLDIACCFRGYKLAEVEILLRALYDDCMKHYIGVLIEKSLINVSRRGTVEMHDLIQDMGRQIDQKESPKEPGKRRRLWLPKDVIHVLKDNNGTSQIEIIWLDFFISEKKETVECNENTFMEMENLKILIIPDVSYLPNLEELSFEGCESLIAVDDSVGFMSKLKILNAKGCSKLLSFPHLHLTSLERLELSLCSNLKNFPKISRKMGNIRKLSLNELRIEELPVSFQNLTGLEELCINCDFLRLSPIVLTPELFDINIYNCKEWQWVNSEEGFALLARVSILELWGSNVTFLPECIKEFHNLFSLNVSDCKRLKEIRGVPPNLKRFRAINCISLTSSGSSMLLNQVLC 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02942 783 SMART till_3 10 149 IPR000157 GO:0007165
Spst4g02942 783 Pfam NB-ARC domain 207 413 IPR002182 GO:0043531
Spst4g02942 783 SUPERFAMILY "Winged helix" DNA-binding domain 416 523 IPR036390 -
Spst4g02942 783 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 152 IPR035897 -
Spst4g02942 783 FunFam Disease resistance protein (TIR-NBS-LRR class) 7 177 - -
Spst4g02942 783 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 439 IPR027417 -
Spst4g02942 783 Gene3D - 5 181 IPR035897 -
Spst4g02942 783 Gene3D Ribonuclease Inhibitor 639 776 IPR032675 -
Spst4g02942 783 Gene3D Ribonuclease Inhibitor 547 638 IPR032675 -
Spst4g02942 783 Pfam TIR domain 11 175 IPR000157 GO:0007165
Spst4g02942 783 Gene3D - 182 340 IPR027417 -
Spst4g02942 783 ProSiteProfiles TIR domain profile. 9 176 IPR000157 GO:0007165
Spst4g02942 783 SUPERFAMILY L domain-like 486 769 - -
Spst4g02942 783 PRINTS Disease resistance protein signature 211 226 - -
Spst4g02942 783 PRINTS Disease resistance protein signature 380 394 - -
Spst4g02942 783 PRINTS Disease resistance protein signature 615 631 - -
Spst4g02942 783 PRINTS Disease resistance protein signature 287 301 - -
Spst4g02942 783 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 754 IPR044974 GO:0006952
Spst4g02942 783 Gene3D - 345 429 IPR042197 -
Spst4g02942 783 Coils Coil 122 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02942 Spst-Chr4 69048803 69051903 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02942 550 686 WRKY Transcription Factor Family AT4G12020 32.414 3.59e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02942 - - var:108344036 966.837