Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02939 ATGGCTGCATCCATCCATGTGTTCCTCAACTTCAATAGGGGAGATACATTAAAATTCGCTTACGTACTCCGCGGGGCACTTGATAAAAAAGGAATCCACACTTTCATTGATGATGGGAACTATTACGAACAAAATTACGTGAAGGGAATGCAAGAATCTAAGGTTGCCATCATTGTGCTCTCTGAAAACTATGCTTATTCCTCGTTTTGCTTAGATAAACTTGCAACCATCCTTGACTGCCAGAGGAAAGGATTGTTGGTTGTTATACCGGTCTTCTATAAGGTGGATCCTTCATATGTCAGACACCAGAAAGGTAGTTATGGAGAGGCATTGACTAAGCATGAGAAATGGTTCAAGGCTAATAAGGAGAAGTTGCAGAAATGGAGGATGGCTCTGCGTGAAGTTGCTGACTTGTCTGGATATCTTTTCAATGATGGGTACCCACCTAAATCTTTTTTACCTTACAGTTTTTGTATATATGGAGCTGCTGGAGTAGGAAAATCAACACTTGCTCGAGCAGTTTATTCAGTTTCTGGACATTTTGATGGTTCGTATTTCCTTGAAAATGTGAGAGAAAAATCGAACAACCATGGGTTGGAATACCTCCAAAGCATCCTTTTCTCAAAAATACTTGGAGAGAAGGAAAATAAATTAACAACTTCGCAACAAGGAATTTCAATGATAAAGCAGAAGCTCCAAAGAGAGAGGATTCTCTTGATTTTAGATGATGTTGACAAATACGAACAATTAGATGTTACCCTGGGAATACCCATTTGGTTGGGACCGGGTAGCAGAGTCATCATCACTACTCGAGACAGAGAAATGCTAAAATATCCTGAGTTTATAAAATTTTATAAGTTGAAGGAATTGAATAATAGTAATGCTCTTCAATTGCTTACATGGAAAGCTCTTCGAAAGGAAAAAGCTAATCCAAGACATTTAAATGTCTTAAAGCGTGCGGTAAGTTGTGGTTCTCGCCTTCCATTGGCCTTGGAAGTAATAGAATGTAGACTGACAGATGTTGAAGTTATACTTAGTGTTCACTATGGTCACAGCATTAAACATCATATTGGCGTGTTGGTTGAAAAATCTCTCTTGAAGTTTGATTATTTTGATGATAGACTTACATTGCATGGATTGATGGAAGACATGGCTAAAGAAATTATCCGGAAGGGATCACCAGAAGAGCCAGCGAAACACCGTGGAGGATGGTTACCGAAAGATATGATGCATGGTTTGGACTATAACACGGAGTTCGAGAATCTAACCGTCTTGAATTTTGACGACAAGCTTATGAGTTTTCCATCTCTCAACTTGATCTCTCTTGAAAGACTTGAACTTTCAAATTGTTCCCGTCTTGAGAATTTTCCGGAAATATTAGGAAAGATGGAAAACATAAAAGAACTTGAATTGTTTAACCTTCCCATAAAAGAATTGCCAGTTTCATTTCAAAATCTTATTGGACTAGAAAAATTACTCCTGATGTGTGGATTAGTTCAGTTACGAAGTAGCATTCTCACGATGCCTAAGCTATCTGTATTTAGAGCTGAGCGTTGCAAATGGTGGCAATGGGTAAATTCAGAAGATGAAGAAGAAAAAGTGGGCTCAATAGTACCTTCAAAGGTAGATTGTTTTATTGCTCAAAATTGCAGCCTGTATGATGATTTTTTTTCAATAGGTTTCAAGATGTTAGCTCATGTGACATATTTAGAGTTACCGGGGAATAATATCACATTCCTTCCTGAATGCATCGAAGAATTTCACAACCTGTATGCTCTTGATGTGAGTAATTGCAAGCATCTTCAGGAAATTAGAGGAGTTCCATCAAACTTGAAACATTTCAGGGCATTAAACTGCATATCCCTATCTTCCTCCAGTTCAAGCATGTTGTTAACTCAGAAACTTCACGAGGCTGGACATACTGAGTTTTGCCTTCCAGCATCAAGTATTCCAGAGTGGTTCAATCATCAAAGCAGGGGACCTTCAACTTCTTTTTGGTTTCGGAACAAGTTCCAAGCCAATGTTCTTTGCATTCTTGTCGCACCTGTGGGATACGATATTACCTTGGATTGTCCTATTCCCATGCTGTTCATCAATGGCAAAGTTCAAGAATATCACTTTCATAGTTACAAGGGAAAAGGGAGGATGTTGAAATTGGATCACACATATCTCTTTGATCTACAGGTGCTATCTTTCGATAATAATATGTTTGAAGTGCCTTTAGAAAAGGAATGGATGCATGTGGAGGTTACATATGAAGGTGTGTTAGAGACCTCATTAGTTAAAGCAACTGGAATCCATGTATTCAAACATGAAAGTAGCATGGAGGATATTCAATTTGCTGATCCTTATAGCAAGAGAAAAGTAGACCATGAATCGCAAAACCACCCATTAGAAAACATAGATGTCAGCTATGATGTGTTCCTCAGCTTCAGAGGCTTTGACACACTCCATGGTTTTACTGGCTATCTCTACAAAGCTCTTCAAGACAGTGGAATCCACACTTTCATTGATGATGAAAGCCTTCAGAGAGGAGAGGAAATAACACCAACAACTGTGAAAGCAATTAAAGAGTCTAGGATTGCCATCATTGTGCTCTCTATAAACTATGCTTCTTCCTCCTTTTGCTTAGATGAACTTGCTACCATCCTTGACTACCTTAAGAGAAAAAGACTGCTGGTTTTACCAGTCTTTTATAATGTGGATCCTATTCAGGTGAGATATCAGAGAGGTAGTTATGGAGAAGCCTTGGCTAAACATGAGGAGAGGCTCAAGGATCACATGGAAAAGTTGGAGAAATGGAAGATGGCTCTACATCAAGTAGCTAACTTGACTGGATATGAATATGAGTTTATTGGGAAGATTGTTGAGTGGGTCTCCAGAGAGATTGACCCTGCTCATTACCCAGAAGGACTAGAGTCACAGGTGCTAGAAGTAAGGAAACTTTTGAATGTTGGATGTGATGACGGTGTCCACATGATAGGGATCCATGGTGTTGGTGGGGTAGGTAAATCAACACTTGCTCAAGAAGTTTATAATAATTTGATATCTGATCATTTTGATGCTTCATGCCTTATTGAAAAAGTGAGAGAAAAATCAAACAAGCATGGGTTACAATACCTCCAAAGCTTACTTTTTTCGAAATTACTTGGAGAGAAGAACATCAACTTAAAAAGTGTGCAACAAGGAACTTCAATGATACAACGTAGGCTCCAGAAAAAGAAGGTTCTCTTGATTCTAGATGATGTTGACAAGCAGGAGCAATTGCACGCAGTTGTTGGAAGATCTGATTGGTTTGGTCCTGGCAGCAGAGTCATAATCACGACACGAGACAAAAAACTGCTAGCCTCCCATGACGTTCAAAGAACATATGAGGTGAAGAAATTAAATAAGAACAATGCTCTTCAATTGCTTAAATGGAAAGCTTTTAAAATGCATTACTTTGATCCAACGTATGAGGAGCTTTTCAATCGTGCAGTAACTTTTGCTTCTGGCCTTCCATTAGCTTTGGAAGTAATAGGTTCCAACTTGTATGGAAAAAGCATAGAAGAATGGAAATCTGCCATCCATCAATTTGAAAAGTATCCTGATAATCCAATCCAAACAATACTTAAATCAAGCTTTGATTCGTTGGAGGAAAAAGAAAGGAGTGTTTTTCTTGACATTGCTTGTTGCTTCAAAGGATATGAATTGGCAGAGGTTGAAGATATACTTCAAGCTCATTATGGTCAGAGCATGAGGTGTTATATTGATGTATTGGTTGATAAATCTCTAATAAAGCTTAATCCTGGTACAAAACCTTGTTATGATACAGTTACATTGCATGACTTGATTGAGGACATGGGTAAAGATATTGTCCGACAGGAATCACTGACAGAGCCAGGTGAGCGCAGGAGATTATGGTTACTGGAAGATGTAAGAGAAGTTTTAAGAAACAACACGGGAACTAGTAATATTGAAATCATATGTCTGGATTTCCCCATATTTGATCAAGAAGAAACAGTAAAATGGGATGGAAAGGCTTTCCAGAATATGCAAAACCTCAAAACACTCATTATTAGAAATGGTAATTTTTCCAAAGGTCCAGAATATCTCCCAAATAGTTTGAGAGTACTTGAATGGTGTAGATATCCGTCAGATTGTTTGCCATCTGATTTTCATCCAAAGGAACTTGCCATATGCAAGAACTACATGAGGTCAGAAACATTCTGCTTAATTTGCCAGGACAAGGATTCGAGAGTGGTTCAATCCGTAAAGCATGGGACCTTCAACAAGTTCATTGTCTTGCAAAAAGTACATAAAGGGGAAAAAGGAAATCAGAGAATGATGGTTGAGTAA 4338 0.3843 MAASIHVFLNFNRGDTLKFAYVLRGALDKKGIHTFIDDGNYYEQNYVKGMQESKVAIIVLSENYAYSSFCLDKLATILDCQRKGLLVVIPVFYKVDPSYVRHQKGSYGEALTKHEKWFKANKEKLQKWRMALREVADLSGYLFNDGYPPKSFLPYSFCIYGAAGVGKSTLARAVYSVSGHFDGSYFLENVREKSNNHGLEYLQSILFSKILGEKENKLTTSQQGISMIKQKLQRERILLILDDVDKYEQLDVTLGIPIWLGPGSRVIITTRDREMLKYPEFIKFYKLKELNNSNALQLLTWKALRKEKANPRHLNVLKRAVSCGSRLPLALEVIECRLTDVEVILSVHYGHSIKHHIGVLVEKSLLKFDYFDDRLTLHGLMEDMAKEIIRKGSPEEPAKHRGGWLPKDMMHGLDYNTEFENLTVLNFDDKLMSFPSLNLISLERLELSNCSRLENFPEILGKMENIKELELFNLPIKELPVSFQNLIGLEKLLLMCGLVQLRSSILTMPKLSVFRAERCKWWQWVNSEDEEEKVGSIVPSKVDCFIAQNCSLYDDFFSIGFKMLAHVTYLELPGNNITFLPECIEEFHNLYALDVSNCKHLQEIRGVPSNLKHFRALNCISLSSSSSSMLLTQKLHEAGHTEFCLPASSIPEWFNHQSRGPSTSFWFRNKFQANVLCILVAPVGYDITLDCPIPMLFINGKVQEYHFHSYKGKGRMLKLDHTYLFDLQVLSFDNNMFEVPLEKEWMHVEVTYEGVLETSLVKATGIHVFKHESSMEDIQFADPYSKRKVDHESQNHPLENIDVSYDVFLSFRGFDTLHGFTGYLYKALQDSGIHTFIDDESLQRGEEITPTTVKAIKESRIAIIVLSINYASSSFCLDELATILDYLKRKRLLVLPVFYNVDPIQVRYQRGSYGEALAKHEERLKDHMEKLEKWKMALHQVANLTGYEYEFIGKIVEWVSREIDPAHYPEGLESQVLEVRKLLNVGCDDGVHMIGIHGVGGVGKSTLAQEVYNNLISDHFDASCLIEKVREKSNKHGLQYLQSLLFSKLLGEKNINLKSVQQGTSMIQRRLQKKKVLLILDDVDKQEQLHAVVGRSDWFGPGSRVIITTRDKKLLASHDVQRTYEVKKLNKNNALQLLKWKAFKMHYFDPTYEELFNRAVTFASGLPLALEVIGSNLYGKSIEEWKSAIHQFEKYPDNPIQTILKSSFDSLEEKERSVFLDIACCFKGYELAEVEDILQAHYGQSMRCYIDVLVDKSLIKLNPGTKPCYDTVTLHDLIEDMGKDIVRQESLTEPGERRRLWLLEDVREVLRNNTGTSNIEIICLDFPIFDQEETVKWDGKAFQNMQNLKTLIIRNGNFSKGPEYLPNSLRVLEWCRYPSDCLPSDFHPKELAICKNYMRSETFCLICQDKDSRVVQSVKHGTFNKFIVLQKVHKGEKGNQRMMVE 1445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02939 1445 ProSiteProfiles TIR domain profile. 803 963 IPR000157 GO:0007165
Spst4g02939 1445 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 805 1395 IPR044974 GO:0006952
Spst4g02939 1445 Gene3D - 1128 1212 IPR042197 -
Spst4g02939 1445 SUPERFAMILY L domain-like 421 631 - -
Spst4g02939 1445 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 141 IPR035897 -
Spst4g02939 1445 ProSiteProfiles TIR domain profile. 3 163 IPR000157 GO:0007165
Spst4g02939 1445 SUPERFAMILY Toll/Interleukin receptor TIR domain 799 947 IPR035897 -
Spst4g02939 1445 FunFam Disease resistance protein (TIR-NBS-LRR class) 802 964 - -
Spst4g02939 1445 Pfam TIR domain 805 960 IPR000157 GO:0007165
Spst4g02939 1445 Pfam TIR domain 7 134 IPR000157 GO:0007165
Spst4g02939 1445 Gene3D - 963 1123 IPR027417 -
Spst4g02939 1445 Gene3D - 153 281 IPR027417 -
Spst4g02939 1445 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 340 IPR027417 -
Spst4g02939 1445 SMART AAA_5 153 290 IPR003593 GO:0016887
Spst4g02939 1445 SMART AAA_5 990 1129 IPR003593 GO:0016887
Spst4g02939 1445 SUPERFAMILY "Winged helix" DNA-binding domain 335 393 IPR036390 -
Spst4g02939 1445 Gene3D Ribonuclease Inhibitor 403 529 IPR032675 -
Spst4g02939 1445 Gene3D Ribonuclease Inhibitor 530 745 IPR032675 -
Spst4g02939 1445 Gene3D - 802 962 IPR035897 -
Spst4g02939 1445 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 966 1222 IPR027417 -
Spst4g02939 1445 SUPERFAMILY "Winged helix" DNA-binding domain 1199 1310 IPR036390 -
Spst4g02939 1445 Pfam NB-ARC domain 158 334 IPR002182 GO:0043531
Spst4g02939 1445 Pfam NB-ARC domain 975 1211 IPR002182 GO:0043531
Spst4g02939 1445 Gene3D - 2 152 IPR035897 -
Spst4g02939 1445 SMART till_3 4 138 IPR000157 GO:0007165
Spst4g02939 1445 SMART till_3 804 944 IPR000157 GO:0007165
Spst4g02939 1445 Coils Coil 917 937 - -
Spst4g02939 1445 PRINTS Disease resistance protein signature 1070 1084 - -
Spst4g02939 1445 PRINTS Disease resistance protein signature 1163 1177 - -
Spst4g02939 1445 PRINTS Disease resistance protein signature 993 1008 - -
Spst4g02939 1445 PRINTS Disease resistance protein signature 1343 1359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02939 Spst-Chr4 69009786 69019323 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02939 430 519 WRKY Transcription Factor Family AT4G12020 43.011 1.27e-07 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02939 - - pvu:PHAVU_004G140500g 967.607