Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02935 ATGAGTGGAAAGGCCTCCGTCTCCAAGGAACTCAATGCCAAGCACACAAAGATATTAGAGGGACTTGTTAAGCTACCGGACAACAGGGAATGTGCAGACTGCTGGACAAAGGCACCAAGATGGGCAAGTGTGAATTTAGGAATATTCATATGCATGCAATGTTCAGGAATTCACCGGAGTCTTGGAGTACATATATCACAGGTGCGCTCCACTACATTGGATACCTGGTTGCCTGATCATGTTTCTTTTATGCAATCAATGGGTAATGTGAGATCAAATAAGCACTGGGAGGCAGAATTACCACCGAATTTTGACAGAAATGCATATGGAATTGAGAGATTCATTCGTTCTAAGTACGTGGAGAAAAGATGGGCTTCAAAAGGAGGACTACAACCAGCTTCAAAGTCAGCTGAAATAATCTTTAAGACGAAAGAGTCACCACCTGTTGGGGCCAATATTGCTACTCAGAAGAATAGGAGATTGTCACTTGAGGAAAGCATTCTTGTGAAACATATGACACATGTTCCGCCTACAAGAACAAGATCTCACGAGATATATTCAGAAAGAGGAATGAAAGAATGGACAAGGGGGAAGGTGTTTGAAGGAGTGTGGTCACAGACATATCTAGTGGCAGGTCATAATTTGCATTTGTATTCTCTTTATGCACGACTAAAAATTTCTTTTTCCTTCCAAGAATTTCTAAATCAAAAAAAGGCCAATAAAACTTCATCTCTTGCAATTCAGGGGTCCTTTGATTCGCAAAATAAGCATTCACCACCAACAATAAGGAGGCCATCCGCATCATTGGATTTTGGCAGCTCCAAGAAGAACAATGGTACCGTTGATCATTTTGGCTTGTTTTCCGTCCATGCTACTAAACAGGATTCATCAAGTACACCGACTAGCTGGATAACTTTTGACTGTAAGAGCACAATACTTGACAAGGTTTATGAGGTCTGCATTGATCTGGCTTCCACTTCTTCTGTGGCCATCTCCTCTCACTCCGAATCTCACCTCGATCGGTATATACCTCGCGTTTTCTCGTTCACTCATGTGAAAATTAACTCACAAAAAATGGAAAAACTCAGGCCAGCGTGGGCTGTCAAGGCGATCATCGTCATCATTTTCACTTCGATTCTTTTCCGATGCGTTTGCGGGGAGAATCATACGGTTGGTGGAGCTTCCGGCTGGGATCTCCGTTCCAATATTCAGGCCTGGTCTTCTACAACAACGTTTAATATCGGAGACGATCTCGTGTTCTCATACACGCCGGTTCACGACGTGGTGGAGGTAAACCAACAAGGTTACGAAACGTGTGCGATAGCCAACGCTCTTGCCACGTACGACAGCGGAGACACCTTGATTCACTTAAGCGGAGCGGGAACGCGCTACTTCGTGTGTGGCCGAATGGGCCACTGTCAACAGGGCCTTAAACTCCAGGTCCAAGTTCTAGCCCAGTCCAACAACGGAACCAACGACGATCAAAACCAAGGCCCCACCGCTTCTCCTCCTCCTCCTCCTCCTCCTCCTCAGCCGGCTTCTCCGCCGCCTCAAGATGACGCGCACTCACCTGCGGAGGAGCTCTCGCCCTACGAGCTTTCACATGCAGAGGAGCGCTATGGGGTGGTGCCGTTAATTACGCTCGTAATCGTGCTCGCCTTCGCCCGCGCTCCTTTCTTCTTCGCTTTTCCTCGCCTCCGTTTTCATCTCATGCGTTGA 1719 0.4671 MSGKASVSKELNAKHTKILEGLVKLPDNRECADCWTKAPRWASVNLGIFICMQCSGIHRSLGVHISQVRSTTLDTWLPDHVSFMQSMGNVRSNKHWEAELPPNFDRNAYGIERFIRSKYVEKRWASKGGLQPASKSAEIIFKTKESPPVGANIATQKNRRLSLEESILVKHMTHVPPTRTRSHEIYSERGMKEWTRGKVFEGVWSQTYLVAGHNLHLYSLYARLKISFSFQEFLNQKKANKTSSLAIQGSFDSQNKHSPPTIRRPSASLDFGSSKKNNGTVDHFGLFSVHATKQDSSSTPTSWITFDCKSTILDKVYEVCIDLASTSSVAISSHSESHLDRYIPRVFSFTHVKINSQKMEKLRPAWAVKAIIVIIFTSILFRCVCGENHTVGGASGWDLRSNIQAWSSTTTFNIGDDLVFSYTPVHDVVEVNQQGYETCAIANALATYDSGDTLIHLSGAGTRYFVCGRMGHCQQGLKLQVQVLAQSNNGTNDDQNQGPTASPPPPPPPPQPASPPPQDDAHSPAEELSPYELSHAEERYGVVPLITLVIVLAFARAPFFFAFPRLRFHLMR 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02935 572 SMART arf_gap_3 16 132 IPR001164 GO:0005096
Spst4g02935 572 Pfam Plastocyanin-like domain 401 476 IPR003245 GO:0009055
Spst4g02935 572 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 137 IPR001164 GO:0005096
Spst4g02935 572 ProSiteProfiles Phytocyanin domain profile. 387 485 IPR003245 GO:0009055
Spst4g02935 572 FunFam stromal membrane-associated protein 1 isoform X1 1 129 - -
Spst4g02935 572 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 309 IPR044520 GO:0005096
Spst4g02935 572 SUPERFAMILY ArfGap/RecO-like zinc finger 15 126 IPR037278 -
Spst4g02935 572 Pfam Putative GTPase activating protein for Arf 17 127 IPR001164 GO:0005096
Spst4g02935 572 CDD ArfGap 19 119 - -
Spst4g02935 572 CDD Phytocyanin 388 483 - -
Spst4g02935 572 MobiDBLite consensus disorder prediction 488 527 - -
Spst4g02935 572 FunFam Blue copper 385 489 - -
Spst4g02935 572 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Spst4g02935 572 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Spst4g02935 572 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Spst4g02935 572 Gene3D - 386 489 IPR008972 -
Spst4g02935 572 MobiDBLite consensus disorder prediction 250 270 - -
Spst4g02935 572 SUPERFAMILY Cupredoxins 386 484 IPR008972 -
Spst4g02935 572 MobiDBLite consensus disorder prediction 499 519 - -
Spst4g02935 572 Gene3D Arf GTPase activating protein 2 129 IPR038508 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02935 Spst-Chr4 68984161 68990406 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02935 338 484 Miscellaneous Gene Families AT2G32300 36.667 1.07e-28 114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02935 4 68984161 68990406 Spst4g02935 4 68984161 68990406 ECH
Spst3g00618 3 9768194 9773468 Spst4g02935 4 68984161 68990406 PCT