Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02925 ATGTGTTTTCCTCTTTCCCTTCGACCCAAAGCACCTTATTCAGTCATTTTTCTCTCTCTAGTCTTTCTAGTGAGAGAAACCCACTTTCTTTTTCTTTCATCTTCTCTTCCTTTCACTCCACTGCCCAGCTTCACCCTTCCACTGCTCGCCGTTTCGGCTATTTACTTTTCTCTGCTTTTACTAAGTTTTGTAGATGTTTTCGGTGATGGGTATGCTTGTTTTCCGTTTGGTTTAGTGGGTATTCCATGTGCTTCAGATCTTGAGCTCAAGGAGTATCTTGTCATTTTAATTGGTAAGTTGTTGCTATCAAGTAACTGGGAAATGCTGGCTTGTCCTCAAAGTGATTCATTTTGTGATTTTCTGTTCTTTTGGATTCTTCATCCCTTAGCATTGCCAATGCTGATAGTAGATTTGCCTTTTGTTCTTGAATTGTTAATCACAAACTTTTATCCCATGTGTGCAGTTTCCATTATGGTCAAAAAGAAAAGAACTGAAGGACCCAGCGGGGGTGAAAGCTCTGAAGCTCAACGCCCTGCTGAAAGAAATGCACCACCGCAACAACATGGTGCTGCCCCAGGAATGACTGGACCCCAAGGAGGAGGTAGATCATGGGGTCCTCAGGGAGGACGGGGAGGTTATGGTGGGGGCCGCAGCCGCGGGATGCCCCAACAGCCATATGGCGCCCCTCCTGATTATCAAGGTAGGGGAAGGGGAGGGCCTTCTCAGCAAGGAGGCCGTGGAGGATACAGCAGTGGCCGAGGAGGAAGTGGTGGTGGTGTGGGCAGTGGCCGAGGCGTAGGTCCTTCATACAGCGGCCCATCTAGGCCACCAGTACCCGAGCTGCACCAAGCAACCTCAGTTCAATCATATCAAACTGGGGTGAGTCCTCAGCCTATATCATCTGAGGCCAGTTCTTCTGTGCCACCTGAACCTGTTGATTTGGAACAATCAATGGGGCAAATGGTGCTTCATTCTGAAGCTACTCCTGCTCCTCCACCCCAAAGTAAATCATCAATGAGGTTTCCCCTTCGACCTGGGAAGGGTAGCTACGGCACAAAATGCATTGTCAAGGCTAATCATTTCTTTGCTGAGTTACCTAACAAAGATCTGCATCAGTATGATGTAACAATTACTCCTGAAGTGACATCCAGAGGTGTGAATCGAGCTGTTATGGAGCAATTAGTTAGGCTGTACAGGGATTCTCACTTGGGCAAGAGACTTCCTGCATATGACGGGCGCAAGAGCCTCTATACTGCTGGGCCATTGCCATTTATTTCAAAGGAGTTTCGAATTACTCTTATCGATGATGATGAAGGAGCAGCAGGAGGGCAGAGAAGGGACCGAGAGTTCAAGGTGGTCATAAAGTTGGCTGCACGAGCAGACCTTCACCATTTAGGACTCTTTTTGCAGGGAAGACAAACTGATGCTCCTCAAGAGGCTTTGCAGGTCCTTGACATTGTACTTCGTGAACTTCCTACTACAAGGTATTGCCCTGTAGGCAGATCATTTTATTCACCCGATCTGGGCAGAAGACAGCCTTTAGGTGAGGGATTGGAAAGCTGGCGAGGTTTCTACCAGAGTATTCGTCCCACTCAGATGGGTTTGTCACTGAATATTGATATGTCCTCCACTGCATTTATTGAGCCATTGCCAGTAATTGAGTTTGTTACTCAACTGTTAAATAGAGATGTATCTGCTCGACCTCTGTCTGATGCTGATCGTGTGAAGATAAAGAAGGCTCTCCGAGGAATCAAAGTTGAAGTAACACACCGTGGAAATATGAGAAGGAAATACCGAATCTCTGGCCTGACTTCTCAGGCAACAAGAGAGTTGACATTCCCGGTAGATGAAAGGGGAACTATGAAATCTGTTGTGGAGTACTTCTATGAGACATATGGGTTTGTCATTCAACATACTCAATGGCCTTGTCTACAAGTTGGGAATACACAGAGACCTAACTATCTGCCAATGGAGGTTTGCAAGATTGTGGAAGGTCAAAGATATTCAAAAAGGTTGAATGAGAGACAGATTACTGCTCTTCTGAAAGTTACATGCCAGCGTCCTATTGAGAGGGAGCGTGATATCATGCAGACTGTGCATCACAATGCATACCACGAAGATCCTTATGCCAAAGAGTTCGGAATCAAAATTAGTGAGAAGCTTGCTCAAGTTGAAGCACGCATCCTTCCTGCACCCTGGCTCAAGTATCATGATACAGGCAGAGAAAAAGATTGTCTTCCTCAAGTTGGGCAATGGAATATGATGAACAAGAAAATGGTAAATGGGGGTACAGTTAACCACTGGTTCTGCATAAATTTTTCAAGGAATGTTCAAGATAGTGTTGCCCGGGGCTTTTGCTATGAACTCGCACAGATGTGTTATATATCTGGCATGGCATTTAATCCTGAGCCAGTTGTACCCCCAATCAGTTCTCGCCCTGATCAAGTGGAGAAAGTTCTAAAAACCCGGTATCACGATGCTAAGAATAAGCTTCACGGAAGGGAGCTTGATCTGCTCATTGTTATTTTGCCTGACAATAATGGATCACTTTATGGTGACCTCAAACGAATATGTGAGACAGATCTTGGACTAGTTTCACAATGTTGTTTGACTAAGCATGTGTTTAAAATGAGTAAGCAGTACCTTGCAAATGTTGCTTTGAAAATTAATGTCAAAGTGGGAGGGAGAAACACTGTACTTGTTGATGCGCTGTCGCGACGCATTCCCTTAGTTGGTGACAGACCCACTATTATTTTTGGAGCTGATGTGACTCATCCACATCCTGGAGAGGATTCAAGCCCGTCAATAGCAGCTGTTGTGGCCTCTCAAGATTATCCTGAAATTACGAAGTATGCTGGTTTAGTCTGTGCCCAAGCTCATAGACAGGAACTCATTCAGGATCTTTTCAAACAATGGCAAGATCCAGTCAGAGGAACAGTGACTGGTGGAATGATCAAAGAACTTCTTATATCTTTTAGGAGGGCTACGGGACAGAAGCCACAGCGTATTATATTTTACAGGGATGGTGTAAGTGAAGGGCAATTTTACCAAGTCTTACTGTTTGAGCTTGATGCTATTCGAAAGGCATGTGCATCCCTTGAACCCAACTATCAGCCTCCTGTGACGTTTGTTGTGGTTCAAAAGCGTCATCACACAAGGCTGTTTGCCAGCAGTCATCAGGACAAGAGTTCTGTTGACAGGAGTGGCAACATATTGCCTGGCACAGTTGTGGATTCCAAGATCTGTCATCCAACCGAGTTTGACTTTTATCTTTGCAGCCATGCTGGGATACAGGGTACAAGCCGTCCTGCTCACTACCACGTGTTATGGGATGAAAACAATTTTACCGCAGATGCTTTGCAAACTCTTACTAACAATCTTTGCTACACATATGCTAGATGCACACGATCTGTTTCAATTGTGCCTCCTGCATATTATGCCCATTTGGCTGCTTTCCGTGCAAGATTTTACATGGAACCGGAGACGTCTGATAGTGGGTCCATGACTAGTGGTGCAGTTGCTGGCCGTGGGATGGGTGGTGGTCTAGGTCGAAGCACCCGAGCTCCTGGAGCTAATGCTGCTGTGAGACCACTACCTGCGCTGAAGGAGAATGTGAAGAGGATGGTAGAAGTGTGTATGGGAATGTTGCAAGTATCTTATGAGATTGTGGATGCAACTCATCTTCATCTCCAAGAATCCCAAGTTTAA 3708 0.455 MCFPLSLRPKAPYSVIFLSLVFLVRETHFLFLSSSLPFTPLPSFTLPLLAVSAIYFSLLLLSFVDVFGDGYACFPFGLVGIPCASDLELKEYLVILIGKLLLSSNWEMLACPQSDSFCDFLFFWILHPLALPMLIVDLPFVLELLITNFYPMCAVSIMVKKKRTEGPSGGESSEAQRPAERNAPPQQHGAAPGMTGPQGGGRSWGPQGGRGGYGGGRSRGMPQQPYGAPPDYQGRGRGGPSQQGGRGGYSSGRGGSGGGVGSGRGVGPSYSGPSRPPVPELHQATSVQSYQTGVSPQPISSEASSSVPPEPVDLEQSMGQMVLHSEATPAPPPQSKSSMRFPLRPGKGSYGTKCIVKANHFFAELPNKDLHQYDVTITPEVTSRGVNRAVMEQLVRLYRDSHLGKRLPAYDGRKSLYTAGPLPFISKEFRITLIDDDEGAAGGQRRDREFKVVIKLAARADLHHLGLFLQGRQTDAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIEFVTQLLNRDVSARPLSDADRVKIKKALRGIKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTMKSVVEYFYETYGFVIQHTQWPCLQVGNTQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPIERERDIMQTVHHNAYHEDPYAKEFGIKISEKLAQVEARILPAPWLKYHDTGREKDCLPQVGQWNMMNKKMVNGGTVNHWFCINFSRNVQDSVARGFCYELAQMCYISGMAFNPEPVVPPISSRPDQVEKVLKTRYHDAKNKLHGRELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVGDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDYPEITKYAGLVCAQAHRQELIQDLFKQWQDPVRGTVTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLFELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFASSHQDKSSVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADALQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSGAVAGRGMGGGLGRSTRAPGANAAVRPLPALKENVKRMVEVCMGMLQVSYEIVDATHLHLQESQV 1235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02925 1235 Gene3D - 728 901 - -
Spst4g02925 1235 Pfam Mid domain of argonaute 747 822 IPR032473 -
Spst4g02925 1235 SMART PAZ_2_a_3 554 686 IPR003100 GO:0005515
Spst4g02925 1235 Pfam Argonaute linker 2 domain 690 736 IPR032472 -
Spst4g02925 1235 Gene3D paz domain 543 668 - -
Spst4g02925 1235 SUPERFAMILY PAZ domain 355 700 IPR036085 GO:0005515
Spst4g02925 1235 ProSiteProfiles Piwi domain profile. 838 1159 IPR003165 GO:0003676
Spst4g02925 1235 MobiDBLite consensus disorder prediction 164 313 - -
Spst4g02925 1235 FunFam Argonaute 10 728 901 - -
Spst4g02925 1235 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 332 1160 - -
Spst4g02925 1235 ProSiteProfiles PAZ domain profile. 550 664 IPR003100 GO:0005515
Spst4g02925 1235 SMART Piwi_a_2 838 1159 IPR003165 GO:0003676
Spst4g02925 1235 CDD Piwi_ago-like 708 1158 IPR045246 -
Spst4g02925 1235 Pfam N-terminal domain of argonaute 353 488 IPR032474 -
Spst4g02925 1235 FunFam Protein argonaute-2 543 669 - -
Spst4g02925 1235 Pfam Piwi domain 839 1158 IPR003165 GO:0003676
Spst4g02925 1235 FunFam protein argonaute 10-like 907 1212 - -
Spst4g02925 1235 Pfam Argonaute linker 1 domain 498 548 IPR014811 -
Spst4g02925 1235 Pfam PAZ domain 554 679 IPR003100 GO:0005515
Spst4g02925 1235 Pfam Glycine-rich region of argonaut 227 330 IPR024357 -
Spst4g02925 1235 CDD PAZ_argonaute_like 549 663 - -
Spst4g02925 1235 Gene3D - 907 1209 IPR036397 GO:0003676
Spst4g02925 1235 SMART DUF1785_2 497 549 IPR014811 -
Spst4g02925 1235 MobiDBLite consensus disorder prediction 281 311 - -
Spst4g02925 1235 SUPERFAMILY Ribonuclease H-like 824 1159 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02925 Spst-Chr4 68903401 68911234 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02925 231 1212 Eukaryotic Initiation Factors Gene Family AT1G48410 81.073 0.0 1610