Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02924 ATGTCACCGGTTGGATTACCACCTGGCTTTAGGTTCCATCCAACCGATGAAGAGCTTGTCAACTACTATCTCAAGAGGAAGATCAATGGCCAAGAAATTGAACTTGATATCATTCCTGAAGTTGATCTCTACAAATGTGAACCTTGGGAATTAGCAGAGAAATCATTTTTACCTAGTAGAGATCCAGAGTGGTATTTTTTTGGACCCCGGGATAGGAAATACCCGAATGGGTTTAGAACAAATAGAGCAACTCGCGCAGGGTACTGGAAGTCCACTGGAAAAGACAGGAGAGTTTCCTGCCAAAGCAGACCCATTGGCATGAAGAAGACTTTGGTATACTACAGAGGCAGAGCTCCTCAAGGGATCAGAACTGATTGGGTAATGCATGAGTATCGCCTTGATGACAAAGAGTGTGAAGACACCACTGGATTACAGGACACTTATGCATTGTGCCGTGTGTTCAAGAAAAATGGAATCTGTTCCGAGATTGAAGAGCAAGGACAATGTAGTATATCACTAATTGAGAGCTCCCAAACCATAATTAATGAGTGTGAAACCATGTCTCCTGACATACCAGGGGCATCATCATCATGCTTTGAAGAGGAAGACAAAGATGATTCATGGATGCAGTTCATTACAGAAGATGCATGGTATTCTTCTAATGCAGCTATGGTTGGTGGTGGTGAAGAACTCTCACATGTTACATTTACAAACTAA 717 0.424 MSPVGLPPGFRFHPTDEELVNYYLKRKINGQEIELDIIPEVDLYKCEPWELAEKSFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRVSCQSRPIGMKKTLVYYRGRAPQGIRTDWVMHEYRLDDKECEDTTGLQDTYALCRVFKKNGICSEIEEQGQCSISLIESSQTIINECETMSPDIPGASSSCFEEEDKDDSWMQFITEDAWYSSNAAMVGGGEELSHVTFTN 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02924 238 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 177 - -
Spst4g02924 238 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
Spst4g02924 238 Gene3D NAC domain 15 159 IPR036093 GO:0003677|GO:0006355
Spst4g02924 238 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Spst4g02924 238 FunFam Nac domain-containing protein 86 15 159 - -
Spst4g02924 238 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02924 Spst-Chr4 68878042 68881723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02924 1 229 NAC Transcription Factor Family AT3G17730 76.230 3.09e-134 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst4g02924 NAM 9.4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02924 - - gmx:100784495 492.271