Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02922 ATGGCTAACATGGTCTTTGTTGGTGTTACGGTAGCTGCTGTTTCTCTACCTCCATTACCCATTACAAACAATGCTCTCACTTTCAGTTTCCTTCATAAAAGATACAGACTTCATCTGAATTGTCCGCAAACCAAAAATAGAACAACCTCTCTCTCTTCTTCCTTCTCAATCTCATCATCACCCCTCAGAAACAAAGGTGGTTGTTCTGTGTTGGCGTGTCTCCCTCCTTCTTCTTCTGAATCCTCAACCTCACCATCTTTCACTGCTAAACCCACTTCCCCTTTTCCTTCAACTAAGCTTTATGTCAGTGGGCTATCATTTCGAACCACTGAAGAAAGTTTGCGAAATGCTTTTAAGAATTTTGGTCAACTCGTGGAAGTCAAGCTAGTGATGGACAGAATTGCAAATAGACCAAGGGGGTTTGCTTTTCTTCGTTATGCAAATGAAGAAGAATCTCAGAAGGCTATTGAGGGAATGCATGGAAAGTTTTTGGATGGTAGGGTCATATTTGTGGAAGTTGCCAAACCGAGATCGGAGCTACCACAACGGCACAAGGAAGGCACAAGATTGTAA 573 0.4241 MANMVFVGVTVAAVSLPPLPITNNALTFSFLHKRYRLHLNCPQTKNRTTSLSSSFSISSSPLRNKGGCSVLACLPPSSSESSTSPSFTAKPTSPFPSTKLYVSGLSFRTTEESLRNAFKNFGQLVEVKLVMDRIANRPRGFAFLRYANEEESQKAIEGMHGKFLDGRVIFVEVAKPRSELPQRHKEGTRL 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02922 190 Gene3D - 60 187 IPR012677 -
Spst4g02922 190 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 98 176 IPR000504 GO:0003723
Spst4g02922 190 SMART rrm1_1 99 172 IPR000504 GO:0003723
Spst4g02922 190 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 100 169 IPR000504 GO:0003723
Spst4g02922 190 SUPERFAMILY RNA-binding domain, RBD 85 184 IPR035979 GO:0003676
Spst4g02922 190 PANTHER NUCLEOLAR PROTEIN 8 73 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02922 Spst-Chr4 68870427 68872808 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02922 84 186 Eukaryotic Initiation Factors Gene Family AT3G16380 35.922 2.75e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02922 - - gmx:100305561 258.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02922 4 68870427 68872808 Spst4g02922 4 68870427 68872808 ECH