Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02921 ATGCTTTTGTTGTGGTTGGCTGCTGGGGTTAGTCTCTGTGGAGGTTTTGGGTGTTTTCTGAGGCAGGGCTGGCTCTCATTTTGCACCAATGGAGATGCAGTTTTGAACCATGATTTAAATCCTAATGTGTCAGTCTGTCGGGATCAAATAGAAAGCACTAGATCAACCATATTTGGCTCAGCTAGCAACTTCCATTCAAATGGTGGAAGAGAATCTGAAAATGTTGCTCATGTACCTTCTGTTGGAAACAGCCATACTCCCAAGGTGAGGAAACCATATACCATTACTAAACAAAGGGAGAAGTGGACAGAGGAAGAACATCAAAAGTTCCTTGAAGCTTTGAAATTGTATGGTCGCGGGTGGCGCCAAATTGAAGAGCATATAGGTTCCAAAACAGCTGTTCAGATTCGAAGCCATGCTCAAAAGTTTTTCTCTAAGGTTGTGAGGGAATCTGAGGGAAGTGCTGAGAGTTCTATGCAGCCAATTAACATACCTCCTCCTCGACCTAAGAGGAAACCCCTCCACCCATATCCCCGGAAATCAGTTGATGCTTTTAAAGGACACACCATACCAAATGAGACAGAAACATCTCAATCCATGAACCTGCTAGTTGCTGAGAAAGACACCCAATCTCCAACCTCTGTGCTATCTACGGTTGGTTCAGAAGCATTTGGGTCTGCATTTTCGGAGCAGAATAATAGATGTCTTTCTCCAAACTCTTGCACCACTGATATTCACTCAGTCAGCTTGTCACCTGTTGAAAAGGAAAATGATTGTATGACATCCAAAGTATCTGAGGAAGAAGAGAAAGAACCACCAGCTTCAGTTCCTTTATCCACTGTTTCTAACCCAAACATGTGCATAAAGCCCGAGTTTAGTTTCAAGGAAGCTGAATGTGTTACAGAAGATTCTGCCAATATGGCACAAACCACAAGTATTAAGCTTTTTGGAAGAACAGTCTCTATGGTAGATAATCAGAAGTCGCAAAACGTATATAATGTTGGTAAGGCAATAACTGTGAAGTCCGATGAAGTGAATGATATTGAGAATGAGAAGCCTGGCCAATCAACCGAGCATGTAGATACACAATTATCACTAGGCTTGGTTAGTGGGAACTGGCCCATGACACCTGATGCTGATGGAGCTGATCACAGCAAAGAGCCACCGAAGGAGGACATGTGGCTCAGTGAATGTGCACCTGACCCATCTTTTCCAGAATGGAGTTTGTACCAAGGCCTTCCAGCTTTCTGCGTCAGGCCATGCAATCAGCTCCTAAATCCCTTGCCTCTTAGGCCCTCAATGAAAGTAAGAGCAAGAGAGGAGGAAAGTTGTTGCACTGGTTCCAACACTGAATCAGTTTGTGACATGGAAAACCAAGGCAAGAACACGGATGTTGTTGATTCTAAGTGTGAAAAATATCAAGGGGAAGATGCTGCACCCCAGAATCCTGCAAGAGGGTTTGTACCATATAAAAGATGTTTAGCTGACAGAGATGGAAATTCTTTAATTGCGTCCTTGGAAGAGAGGGAGGGGCAACGAGCTCGTGTGTGCTCATAG 1557 0.4393 MLLLWLAAGVSLCGGFGCFLRQGWLSFCTNGDAVLNHDLNPNVSVCRDQIESTRSTIFGSASNFHSNGGRESENVAHVPSVGNSHTPKVRKPYTITKQREKWTEEEHQKFLEALKLYGRGWRQIEEHIGSKTAVQIRSHAQKFFSKVVRESEGSAESSMQPINIPPPRPKRKPLHPYPRKSVDAFKGHTIPNETETSQSMNLLVAEKDTQSPTSVLSTVGSEAFGSAFSEQNNRCLSPNSCTTDIHSVSLSPVEKENDCMTSKVSEEEEKEPPASVPLSTVSNPNMCIKPEFSFKEAECVTEDSANMAQTTSIKLFGRTVSMVDNQKSQNVYNVGKAITVKSDEVNDIENEKPGQSTEHVDTQLSLGLVSGNWPMTPDADGADHSKEPPKEDMWLSECAPDPSFPEWSLYQGLPAFCVRPCNQLLNPLPLRPSMKVRAREEESCCTGSNTESVCDMENQGKNTDVVDSKCEKYQGEDAAPQNPARGFVPYKRCLADRDGNSLIASLEEREGQRARVCS 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02921 518 SMART sant 98 146 IPR001005 -
Spst4g02921 518 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 94 148 IPR017930 -
Spst4g02921 518 SUPERFAMILY Homeodomain-like 93 147 IPR009057 -
Spst4g02921 518 NCBIfam myb-like DNA-binding domain, SHAQKYF class 97 146 IPR006447 GO:0003677
Spst4g02921 518 FunFam protein REVEILLE 6 isoform X1 101 149 - -
Spst4g02921 518 MobiDBLite consensus disorder prediction 61 89 - -
Spst4g02921 518 Gene3D - 101 148 - -
Spst4g02921 518 MobiDBLite consensus disorder prediction 150 185 - -
Spst4g02921 518 ProSiteProfiles Myb-like domain profile. 94 144 IPR001005 -
Spst4g02921 518 ProSiteProfiles SANT domain profile. 97 148 IPR017884 -
Spst4g02921 518 MobiDBLite consensus disorder prediction 262 282 - -
Spst4g02921 518 Pfam Myb-like DNA-binding domain 99 142 IPR001005 -
Spst4g02921 518 CDD SANT 101 144 IPR001005 -
Spst4g02921 518 PANTHER SWI/SNF COMPLEX-RELATED 72 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02921 Spst-Chr4 68865383 68869380 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Spst4g02921 Myb_DNA-binding 3.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02921 - - vum:124836796 803.127