Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02920 ATGGAGTATGGAAGTGGGTCTCCTGGTGATCTCCACCATCACCATGATGGTTCTTCAGATTCCCAGAGAAGGAAGAAGCGTTACCACCGTCACACAGCTAACCAGATTCAGAGGCTTGAATCGATGTTCAAGGAGTGTCCTCACCCAGACGAGAAGCAAAGGATGCAGTTAAGTAGGGAGTTGGGCTTGGCGCCTAGACAGATCAAGTTTTGGTTCCAGAACAGGAGGACCCAGATGAAGGCTCAGCACGAGAGAGCTGATAATTGTGCACTCCGGGCTGAGAATGACAAGATACGTTGTGAGAACATAGCCATAAGGGAGGCCTTAAAAAATGTTATTTGCCCTTCTTGTGGTGGTCCTCCTATCAATGACGATTGTTATTTTGATGAGCAAAAGTTGAGATTGGAGAATGCTCAACTCAAAGAGGAGCTTGATAGAGTATCTAGCATTGCAGCTAAGTACATTGGAAGGCCAATTTCTCAACTCCCACCTGTTCAGCCTATTCATATATCTTCTCTGGACTTGTCAATGGGGAGTTTTGCAAGCCAAGGGTTGGGTGGCCCTTCCCTTGATCTTGACCTTCTCCCCGGGAGTTCTTCCTCATCCATGCCAAATGTGCCTCCTTTCCAACCTGCGTGTTTTTCGGACATGGATAAGTCCCTCATGTCAGACATTGCCTCAAATGCCATGGAAGAAATGATCAGGCTATTGCAAACAAATGAGCCCTTGTGGATGAAAGGTGCTGATGGGAGGGATGTCCTTGATCTTGATACCTATGAAAGATTGTTCCCCAAGGCTAATAGTCACATGAAGAACCCCAATGTTCATGTTGAAGCTTCAAGAGATTCAGGAGTTGTGATTATGAATGGCTTAACATTGATTGACATGTTTATGGACCCAAACAAGTGGATGGAGCTTTTTCCCACCATTGTCACATTGACAAGAACAATTGAAGTTATATCTTCTGGAATGATGGGCGGTCATAGTGGTTCTTTGCAATTGATGTATGAGGAGTTGCAAGTGCTTTCTCCACTTGTTTCTACTAGGGAGTTCTACTTCCTGCGGTACTGTCAGCAAATTGAACAAGGCTTATGGGCGATAGTCGATGTTTCATATGATTTTCCTCAAGATAACCAATTTGCTCCTCAATTTCGATCTCATCGACTGCCTTCTGGTGTCTTTATCCAAGACTTGCCTAATGGATATTCCAAGGTTACCTGGATTGAACATGTAGAGGTTGAAGATAAAACTCCTGTTCATAGGCTCTACAGAAACATGATTTATAGCGGCATTGCATTTGGAGCACAAAGATGGCTAACTACTCTTCAGAGGATGTGTGAAAGAATTGCTTGTCTGATGGTGACAGGCAATTCCACCCGCGATCTTGGAGGAGTGATTCCCTCACCTGAGGGCAAGAGAAGCATGATGAAACTTGCACAAAGGATGGTTACCAATTTTTGTGCTAGCATTAGTGCATCAGCTGGGCACCGATGGACCACACTCGCTGGGAGTGTGATGAATGAGGTTGGAGTCAGAGTCACTGTGCATAAGAGCACAGACCCGGGCCAGCCTAATGGTGTGGTCTTAAGTGCAGCTACCACCATTTGGCTCCCAATCCCTCCACAAACTGTGTTCAATTTCTTCAAGGATGAAAAGAAAAGACCTCAGTGGGATGTTCTTTCCAATGGCAATGCTGTGCAAGAGGTTGCTCATATAGCAAATGGTGCACACCCTGGTAACTGCATATCTGTGCTTCGAGCTTTCAACACAAGTCAAAACAACATGCTGATCCTCCAGGAGAGCTGTGTGGACTCCTCAGGTTCACTAGTGGTTTACTGTCCAGTTGATCTGCCAGCCATCAACATAGCAATGAGTGGTGAAGACCCTTCATACATTCCCCTCCTTCCCTCAGGCTTCACCATTTCCCCTGATGGGCAACCAGACCAAGATGGTGGAGGGGCCTCAACCAGCACAAGCACAGGCAGAGTCATGGGGGGGTCTGGTGGCTCACTCATCACTGTTGCATTCCAAATCCTAGTGAGCAGCTTACCATCTGCCAAACTCAACACGGAGTCGGTGACCACTGTTAATAGCCTCATCGGCAACACTGTCCAACAAATAAAGGCTGCCTTGAATTGTCCTAGTTCCTGA 2151 0.4635 MEYGSGSPGDLHHHHDGSSDSQRRKKRYHRHTANQIQRLESMFKECPHPDEKQRMQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNCALRAENDKIRCENIAIREALKNVICPSCGGPPINDDCYFDEQKLRLENAQLKEELDRVSSIAAKYIGRPISQLPPVQPIHISSLDLSMGSFASQGLGGPSLDLDLLPGSSSSSMPNVPPFQPACFSDMDKSLMSDIASNAMEEMIRLLQTNEPLWMKGADGRDVLDLDTYERLFPKANSHMKNPNVHVEASRDSGVVIMNGLTLIDMFMDPNKWMELFPTIVTLTRTIEVISSGMMGGHSGSLQLMYEELQVLSPLVSTREFYFLRYCQQIEQGLWAIVDVSYDFPQDNQFAPQFRSHRLPSGVFIQDLPNGYSKVTWIEHVEVEDKTPVHRLYRNMIYSGIAFGAQRWLTTLQRMCERIACLMVTGNSTRDLGGVIPSPEGKRSMMKLAQRMVTNFCASISASAGHRWTTLAGSVMNEVGVRVTVHKSTDPGQPNGVVLSAATTIWLPIPPQTVFNFFKDEKKRPQWDVLSNGNAVQEVAHIANGAHPGNCISVLRAFNTSQNNMLILQESCVDSSGSLVVYCPVDLPAINIAMSGEDPSYIPLLPSGFTISPDGQPDQDGGGASTSTSTGRVMGGSGGSLITVAFQILVSSLPSAKLNTESVTTVNSLIGNTVQQIKAALNCPSS 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02920 716 FunFam Homeobox-leucine zipper protein GLABRA 2 224 447 - -
Spst4g02920 716 MobiDBLite consensus disorder prediction 642 662 - -
Spst4g02920 716 MobiDBLite consensus disorder prediction 1 32 - -
Spst4g02920 716 CDD START_ArGLABRA2_like 219 447 - -
Spst4g02920 716 Pfam START domain 225 448 IPR002913 GO:0008289
Spst4g02920 716 CDD homeodomain 24 83 IPR001356 GO:0003677
Spst4g02920 716 ProSiteProfiles START domain profile. 215 451 IPR002913 GO:0008289
Spst4g02920 716 SUPERFAMILY Homeodomain-like 5 82 IPR009057 -
Spst4g02920 716 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 22 712 IPR042160 -
Spst4g02920 716 Gene3D - 224 448 IPR023393 -
Spst4g02920 716 ProSiteProfiles 'Homeobox' domain profile. 22 82 IPR001356 GO:0003677
Spst4g02920 716 Gene3D - 11 96 - -
Spst4g02920 716 FunFam Homeobox-leucine zipper protein HDG1 12 98 - -
Spst4g02920 716 SUPERFAMILY Bet v1-like 469 708 - -
Spst4g02920 716 MobiDBLite consensus disorder prediction 7 23 - -
Spst4g02920 716 ProSitePatterns 'Homeobox' domain signature. 57 80 IPR017970 GO:0000981|GO:0006355
Spst4g02920 716 Pfam Homeodomain 25 80 IPR001356 GO:0003677
Spst4g02920 716 Coils Coil 130 150 - -
Spst4g02920 716 SMART START_1 224 448 IPR002913 GO:0008289
Spst4g02920 716 SMART HOX_1 23 86 IPR001356 GO:0003677
Spst4g02920 716 SUPERFAMILY Bet v1-like 216 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02920 Spst-Chr4 68847889 68851457 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02920 20 716 Homeobox Transcription Factor Family AT1G73360 67.141 0.0 945
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Spst4g02920 START 9.2e-47 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02920 K09338 - gmx:100809075 1313.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02920 4 68847889 68851457 Spst4g02920 4 68847889 68851457 ECH
Spst3g00623 3 9807312 9810269 Spst4g02920 4 68847889 68851457 PCT