Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02917 ATGGAGAATCACCAAGGAAACATGGCTAGTTTTGAAAAAGAGGAGGTGCCTATGCTGTCTGAAACACGTGCTCAACTGTCTGATGAAGTTGTGGATTCTAATTTCCGGAGGCTAGTGTCTAGGACACGAAGTGCTTCAATTTCGATTCCTATGGCTTCCTTGGAATCATATGAGAAAGAAGCTAGTCTTGTGGGACATACTGGTCCACTTCGTAATGTGAGAAAAACCCCCTTTGTGCATATGAGTGGTCCACTGTATGCTACGCATGGAACTGCAAATCTTTCAGGACAGAATATAGCTGCGACAGGAACCAAAGTTGGGGAGAGTAAGACAGAAAACATTTCTAGTTTCAATGGCAGAAACGAAAATCGTTGGAATAACGACTATGATAGAAAGAATGAACACTTAATGAGGTCTGGGCAACTGGGAATGTGTAATGATCCTTATTGTACTACTTGCCCCACTTATTTCAAGGCTGCTCAGCCAAAAACTCGAAAAACTTCTGCCATATTTGATCCCAAGCAATATGGTGTCAAACTGGAAGAGAAAAATGGAATGGTTAATCGACTCAGATGGTATAGAATGCTGGATTGTAATCTTATTGATATTACATTGCTGCATCTTGTGCATTTTAGGTTGGCTTATGTTTCTCCTGAGTCAACTGTAGTAGGTGCTGGAGACTTAGTTGACCATCCCAAGAAAATTGCTCTTAATTATCTGAAGAGTTATTTTTTTATCGACCTATTTGTTGTATTTCCTCTTCCTCAGGTAATGATATTATCTGTCCTACCAAAGTATCTGGGATCATCTGGAGCAAATTATGCTAAAAATCTTCTGCGTGCAGCTATCCTTGTGCAGTATTTTCCTAGATTATTCAGGTTTCTGCCTCAGTTAATTGGCCAGTCTCCAACAGGATTCATTTTTGAGTCAGCTTGGGCAAATTTCATTATAAATCTTCTCATTTTTATGTTATCTGGCCATGTTGTGGGTTCTTTCTGGTACCTCTTTGGTCTACAGAGGGTTAATCAATGTTTGCGAAATGCCTGTCGTGATTCTAGTATTCGTGGATGCTCAACATTTATTGATTGTGGCCGGGCATCTGGCCGTAAATCAGATCTGTGGAGCGAAAATGTGAATGCCACTGCTTGTATGAACGCCACTTCAGGTGCTTTCGCGTATGGGATCTATGTAAATGCTGTACAATTGACCATAGAAACTAATGTGGTGGAAAAATATGTATTTGCACTCTTTTGGGGCTTCCAGCAAATCAGTACTCTGGCTGGTAATCAAACCCCCAGCCCTTTTGTGTGGGAAGTTCTTTTTACGATGGCCATTATAGTGCCCTGTGCTGATGACATTGTTGCTCTTAATGCATGTTTGGAAATGAATTATGATCATTTTCCCCCCTCAAGTGCTTTCTCTAAAAGAAGGCTAGAAATGCAACTTAGAGGTCGTGATGTTGAACAATGGATGAGTCATCGTCGCTTGCCCGAAGATCTTAGAAGGAGAGTACGACAGGCTGAACGGTATAGTTGGGCAGCAACAAGAGGAGTGAATGAAGAAACGCTTCTAGAAAAGTTGCCAGAAGATCTCCAGACAGACATAAGACGACATCTATTCAAGTTTGTTAAAAAAGTTCGAATCTTTGCTCTCATGGATGAGCCTATCTTAGATGCAATTTGTGAGAGACTAAAACAAAAGACATACATCAAAGGAAGTAAAATTTTGAGTCAGGGTGGTCTTGTAGAGAAGATGGTCTTTGTTGTACGTGGGAAATTAGAGAGCTTTGGAGATGATGGAAATATTGTTCAATTATCTGAAGGGGATGCGTGTGGCGAAGAACTTCTGACATGGTATCTTGAGCATTCTTCTGTAACTACAGATGGTAAAAAAGTAAGGGTTCAAGGGCAGAGGTTGCTGAGCAACAGGACTGTAAGATGCTTAACAAATGTGGAGGCATTTTCACTTCGTGCTGGAGACCTTGAGGAACTCACAATTCTTTTCACAAGATTCTTGCGAAACCCTCATGTTCAAGGAACACTAAGGTATGTATCACCTTATTGGAGATCCCTTGCAGCAAGCCGCATTCAGGTTGCATGGAGATACAGAAAGAAGCGTCTGAGTCGTGCTTATTCCACACAACAAACATATTGA 2154 0.4109 MENHQGNMASFEKEEVPMLSETRAQLSDEVVDSNFRRLVSRTRSASISIPMASLESYEKEASLVGHTGPLRNVRKTPFVHMSGPLYATHGTANLSGQNIAATGTKVGESKTENISSFNGRNENRWNNDYDRKNEHLMRSGQLGMCNDPYCTTCPTYFKAAQPKTRKTSAIFDPKQYGVKLEEKNGMVNRLRWYRMLDCNLIDITLLHLVHFRLAYVSPESTVVGAGDLVDHPKKIALNYLKSYFFIDLFVVFPLPQVMILSVLPKYLGSSGANYAKNLLRAAILVQYFPRLFRFLPQLIGQSPTGFIFESAWANFIINLLIFMLSGHVVGSFWYLFGLQRVNQCLRNACRDSSIRGCSTFIDCGRASGRKSDLWSENVNATACMNATSGAFAYGIYVNAVQLTIETNVVEKYVFALFWGFQQISTLAGNQTPSPFVWEVLFTMAIIVPCADDIVALNACLEMNYDHFPPSSAFSKRRLEMQLRGRDVEQWMSHRRLPEDLRRRVRQAERYSWAATRGVNEETLLEKLPEDLQTDIRRHLFKFVKKVRIFALMDEPILDAICERLKQKTYIKGSKILSQGGLVEKMVFVVRGKLESFGDDGNIVQLSEGDACGEELLTWYLEHSSVTTDGKKVRVQGQRLLSNRTVRCLTNVEAFSLRAGDLEELTILFTRFLRNPHVQGTLRYVSPYWRSLAASRIQVAWRYRKKRLSRAYSTQQTY 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02917 717 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 201 710 - -
Spst4g02917 717 SMART cnmp_10 548 666 IPR000595 -
Spst4g02917 717 MobiDBLite consensus disorder prediction 103 123 - -
Spst4g02917 717 Gene3D Helix hairpin bin 475 540 - -
Spst4g02917 717 MobiDBLite consensus disorder prediction 103 127 - -
Spst4g02917 717 SUPERFAMILY Voltage-gated potassium channels 234 446 - -
Spst4g02917 717 Gene3D Jelly Rolls 546 670 IPR014710 -
Spst4g02917 717 SUPERFAMILY cAMP-binding domain-like 475 668 IPR018490 -
Spst4g02917 717 ProSiteProfiles cAMP/cGMP binding motif profile. 548 616 IPR000595 -
Spst4g02917 717 Pfam Ion transport protein 202 445 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Spst4g02917 717 CDD CAP_ED 548 664 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02917 Spst-Chr4 68805965 68814859 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02917 8 625 Ion Channels AT3G17700 51.820 0.0 645
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02917 K05391 - gmx:100785556 1123.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02917 4 68805965 68814859 Spst4g02917 4 68805965 68814859 ECH