Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02916 ATGTTGTTCCTTGGAAAATCAGTTCAAGATATTGCAGACTTCGTTCATGTATCGATTCCTATTCCTACGGTATTCACGGAGCCATTAAATCAGATAGAGGTTCCGCACTACCAAACACCAGAAAGTAGTACAGAACATTTTCCTTCATCCTCTGGCAAGGATGAAAATGATTCGCAGAACCAAAATGATGGCACTAATGAGTATTTAGTTAGGTCTGGTTCACTGGGAATGTGTGATGATCCATATTGTTTAACTTGCCCAATCTACCTCAGGTCTAGTGAGCAAAGGATTGCAAATGCTTTGGGTACCTTCAATCAGAAGGAAAATATGTGTAATGTTAGAGACGAGCCTATGACTATTCATTTTGTTGAGCAAATTAGAACCTTGGCTTGTATTATGTACTTCCTAAACATATTTCTTCAGTTTAGGGTGGCTTATGTTTCTTATGAATCATGGCCACGTGGTGCACATTTAATTGATCATCCAAAGAAAATTGCGTTCAGGGTTCTGCCAATTGGATTGTTCACAGGGATGACAGCCCAGAAAAAAATCATTAAAAATCTTCTCATCTTTTTGCCATCTGGCCATGTTGTTGGTTCTATCTGGTATATATTTGGTGTACAGAGAGTTCATGGATGCTTGCTAGATGTCTGCCGCAAGATTACTTCTAATATTACTGGATGCTTAGCATTTACTGACTGTAGGCACCAAGGCGGTGCACCTGGCCTGTGGAAAAATAACGAAATTGCCACTGCTTGTTTGAGTTCCACTTCTGATACTATTCGATATGGAATCTTTCAAGATGCTGCCTCACTTGCTACAGACACTAGTGTCCTAAAAAAAATTGCATTTTCACTGTTTTGGGGCTTTAAGAAGTATCTTCAGGCTCTTCAAAGCAGATACCTTATTGATAGACATCTTTGGAGGACTGAAATGGAACTTAGAGATCGTGATGTTGATCAATGGATGAACCATCGCAGCTTACCACGAGGTTTAAGAAGGAGAATACGAATGGCTGAACATTATAATTGGGCAGCAACAAGAGGATTCAATGAAGAGAAGCTGATGGAGAATTGGCCGGAAGAGCTCCAGACAGACATAAGACGTCATCTCTTCAAATTTATGAAGAAAATTCAAATATTTGCCCTGATGGATGAGTCAATCCTAGATGTAATTTGTGAGAGGTTAAAACCAAGGAGATACATCATAGGAAGTAGAATTTTGAGTGAGGGTGGTGTTGTAGAGACGATGGTCTTTGTTATGCGTGGTAAATTAGAGAGCATTGCAGCAGATGGAACTAGACTTCTCTTATTAGATGGTGATGCTTGTGGAGAAGAACTTCTCCCATGGTATCTTGAGCATGCTACTGTTAGGACAGATGGTAAAAAGGTAAGGCTTCCTACACAGAGATTGGTTAGCAAACGTTCTGTGTGGTGCCTAACAAATGTGGAGGCATTTTCACTTCGCCTTGCAGACCTTGAGAATCTCTCAATTCTTTTCAGAGGATTCTTGCAGAACCCTCGTATGAATTACCTCATTGGCGATTACATGCAGCAAAACGGATTCAGGCTGCATGGAGAAACTGGAAGAGAAGATGCTCTCTTCATAGGGATAGTATTAACATTTCAAATTGAAAGAAAATGGTAA 1647 0.4007 MLFLGKSVQDIADFVHVSIPIPTVFTEPLNQIEVPHYQTPESSTEHFPSSSGKDENDSQNQNDGTNEYLVRSGSLGMCDDPYCLTCPIYLRSSEQRIANALGTFNQKENMCNVRDEPMTIHFVEQIRTLACIMYFLNIFLQFRVAYVSYESWPRGAHLIDHPKKIAFRVLPIGLFTGMTAQKKIIKNLLIFLPSGHVVGSIWYIFGVQRVHGCLLDVCRKITSNITGCLAFTDCRHQGGAPGLWKNNEIATACLSSTSDTIRYGIFQDAASLATDTSVLKKIAFSLFWGFKKYLQALQSRYLIDRHLWRTEMELRDRDVDQWMNHRSLPRGLRRRIRMAEHYNWAATRGFNEEKLMENWPEELQTDIRRHLFKFMKKIQIFALMDESILDVICERLKPRRYIIGSRILSEGGVVETMVFVMRGKLESIAADGTRLLLLDGDACGEELLPWYLEHATVRTDGKKVRLPTQRLVSKRSVWCLTNVEAFSLRLADLENLSILFRGFLQNPRMNYLIGDYMQQNGFRLHGETGREDALFIGIVLTFQIERKW 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02916 548 SUPERFAMILY cAMP-binding domain-like 315 496 IPR018490 -
Spst4g02916 548 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 179 291 - -
Spst4g02916 548 Gene3D Helix hairpin bin 309 372 - -
Spst4g02916 548 CDD CAP_ED 380 496 IPR000595 -
Spst4g02916 548 Gene3D Jelly Rolls 378 501 IPR014710 -
Spst4g02916 548 ProSiteProfiles cAMP/cGMP binding motif profile. 380 448 IPR000595 -
Spst4g02916 548 MobiDBLite consensus disorder prediction 37 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02916 Spst-Chr4 68795621 68804644 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02916 106 457 Ion Channels AT3G17700 38.950 1.32e-88 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02916 K05391 - fve:101293299 381.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02916 4 68795621 68804644 Spst4g02916 4 68795621 68804644 ECH