LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst4g02915	ATGGCGGATTTTGAAAATGGTGAGCTGGAGATGATTGCAGAAGAAACAGATGCGCAACCATATCATGAAACTTTGCATTCCAAATTCCAAAAGCTTTTACCCAATACACAAAGTGTACCAGTTTCTATTCCCATGGAGTCATATGAGAGAGAAACAAGTCTCGTTGGACATGGTGGTTCATTATATACTACACCAGAAACTGATGATTTGCAGCAGAATATAGTTGTAACAAGAAACAACATAGAGGAGACCAAGATAGATAAATTTTCAACTTTCGAGGGCACGGCTTCAAATTATTGGAATAAAAGCTATGATAGCACAAATGAACATTTACTGAGATCTGGACAATTAGGAATTTGTAACGATCCTTATTGTACTGCTTGTCCTACTTACTTCAAGTCTCCTCAGCTAGGAAATCCAAAAGCTTGGAATAATCCTAATCCGAAGAATGCTCTTTATGGGAATGGCAAAGGTTTCTCAATATTTTTTTTTTCTTTATGTTCATCTCTTATTCCTGGAGTTATGAACCCTCACTCTAAATTCATCCAACATTGGAACAAGGTTCTGGCCAGCGTTTGTTTGGTTGCAATTTTTGTGGATCCACTATTTTTCTTCTTACTCTATGTTCGGCAGGATCGTAATTGTATAGTTATCAACTGGAACATTACAAAAGCACTTGTTATAGTTAGAAGCATGAATGACTTCATTTATTTACTTCACATTCTTCTCCAGTTTAGGTTGGCTTTTGTTTCTCCTGAGTCGAGGGTGGTTGGTGCCGGAGATTTGGTTGCTCATCCAAAGAAGATTGCACTTCGTTATCTGAAGGGTTATTTTCTTCTTGATTTATTTGTTGTATTTCCTCTTCCTCAGTCTCCAGCAGGATTCATATTTGAGTCAGCATGGGCAAATTTCGTCATAAATCTTCTTATTTTCATGCTTGCTAGCCATGTTGTTGGCTCTTGCTGGTACCTCTTCGCTTTACAGAGGGTTAATCAATGTTTCCGAAATGCGTGCCATAGTTCTAATATCCCTGGATGCCTGACATTCATAGATTGTGGACATAGACATGTTGTACTCAATGAGCAGAGCCTATCATCAGACCAGTGGAACAACTATCCAGATGCTATTGCATGTTGGAATTCCTCTTCCGGTGGTTCTTTTACTTATGGGCTTTATGCCAATGCTGTACCTCTTACTACACAAATAGATATAGTCACCAAATACATATATGCTCTATTTTGGGGATTACAGCAAATCAGTACTGTGGCTGGTAACCAAACACCTAGCATTTTTGTGTGGGAAGCCCTTTTTGCTATTGCCATCATGGGATTGGGACTTCTGCTTTTTGCGCTTCTCATTGGAAACATACAAAACTTTCTGCAAGGTCTTGGACGCAGGAGGCTAGAAATGCAACTTAGAGGCCGTGATGTTGAGCAATGGATGAGTCATCGACGCTTGCCAGAATACCTGAGAAGGAGAGTACGAGAGGCTGAACGGTATAGTTGGACTGCAACAAGGGGAGTGAATGAAGCAATGCTAATGGAGAATTTTCCAGAAGACCTCCAAGTAGATATAAGACGCCATCTCTTTAAATTTGTTAAGAAAGTTCGAATATTTGCTCTGATGGATGAACCTGTCTTAGATGCCATTTGTGCAAGACTAAGACAAACAACTTATATTGAAGGAAGTAGAATTTTGAGTTACGGTTCTGTGGTAGATAAGATGATATTCGTGGTGCGTGGTAAATTGGAGAGCATTGGAGAAGATGGAACCAGAATTCCTTTATCCGAAGGGGATGCTTGTGGTGAAGAACTCTTGACATGGTATCTTGAGCATTCTTCTGTCAGTGCAGATGGCAGAAGAGTAAGGCTTCCAGGACAGAAGTTGCTTAGCAACAGGACAGTAAGATGCTTAACAAATGTGGAAGCACTTGCACTCCGAGCAGCAAACCTTGAAGAAATCACAATCCTCTTCACAAGATTCTTGCGTAGTTCGCGTGTTCAAGGAGCCTTAAGGTATGAATCACCTTATTGGAGATCCCTTGCAGCAATCCGCATTCAGGTTGCATGGAGATACAGAATGAAACGACTAAGTCATGATAACTCCAAACTTTCAAATTAA	2121	0.4012	MADFENGELEMIAEETDAQPYHETLHSKFQKLLPNTQSVPVSIPMESYERETSLVGHGGSLYTTPETDDLQQNIVVTRNNIEETKIDKFSTFEGTASNYWNKSYDSTNEHLLRSGQLGICNDPYCTACPTYFKSPQLGNPKAWNNPNPKNALYGNGKGFSIFFFSLCSSLIPGVMNPHSKFIQHWNKVLASVCLVAIFVDPLFFFLLYVRQDRNCIVINWNITKALVIVRSMNDFIYLLHILLQFRLAFVSPESRVVGAGDLVAHPKKIALRYLKGYFLLDLFVVFPLPQSPAGFIFESAWANFVINLLIFMLASHVVGSCWYLFALQRVNQCFRNACHSSNIPGCLTFIDCGHRHVVLNEQSLSSDQWNNYPDAIACWNSSSGGSFTYGLYANAVPLTTQIDIVTKYIYALFWGLQQISTVAGNQTPSIFVWEALFAIAIMGLGLLLFALLIGNIQNFLQGLGRRRLEMQLRGRDVEQWMSHRRLPEYLRRRVREAERYSWTATRGVNEAMLMENFPEDLQVDIRRHLFKFVKKVRIFALMDEPVLDAICARLRQTTYIEGSRILSYGSVVDKMIFVVRGKLESIGEDGTRIPLSEGDACGEELLTWYLEHSSVSADGRRVRLPGQKLLSNRTVRCLTNVEALALRAANLEEITILFTRFLRSSRVQGALRYESPYWRSLAAIRIQVAWRYRMKRLSHDNSKLSN	706

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst4g02915	706	CDD	CAP_ED	538	654	IPR000595	-
	Spst4g02915	706	Gene3D	Jelly Rolls	536	660	IPR014710	-
	Spst4g02915	706	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	293	699	-	-
	Spst4g02915	706	SUPERFAMILY	Voltage-gated potassium channels	177	466	-	-
	Spst4g02915	706	SUPERFAMILY	cAMP-binding domain-like	466	656	IPR018490	-
	Spst4g02915	706	Pfam	Ion transport protein	297	465	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Spst4g02915	706	Gene3D	Helix hairpin bin	465	530	-	-
	Spst4g02915	706	PRINTS	EAG/ELK/ERG potassium channel family signature	452	461	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Spst4g02915	706	PRINTS	EAG/ELK/ERG potassium channel family signature	241	250	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Spst4g02915	706	PRINTS	EAG/ELK/ERG potassium channel family signature	502	509	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Spst4g02915	706	PRINTS	EAG/ELK/ERG potassium channel family signature	408	425	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Spst4g02915	706	PRINTS	EAG/ELK/ERG potassium channel family signature	434	445	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Spst4g02915	706	ProSiteProfiles	cAMP/cGMP binding motif profile.	538	606	IPR000595	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst4g02915	Spst-Chr4	68784119	68789780	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst4g02915	36	616	Ion Channels	AT3G17700	51.306	0.0	601

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst4g02915	K05391		-	gmx:100785556	1108.59

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Spst4g02915	4	68784119	68789780	Spst4g02915	4	68784119	68789780	ECH