Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02908 ATGGCAAGCATTGTGGATGTGTATGGACCACACAAAGTTGAACAGAAGAGAAAATTCCAATCTCCCTATATAAGTGGAGGTTCTATCTCTGCAGAGTTCAGTGTGTATAACGCTTTTGGTTCATTGGCTGAGAAGAAAGCATATTCAATGGTTATCACATCCACTGCCACACACCCAGATGCTCATGATGAGTGTATTTCCTCTACTTTTGCTTCCAGATATGTGCGACAATCTATTCCCAAGTTCAAGATGCCAGAGAATTCCATACCAAAGGATGCTGCTTATCAGTTAATAAACGACGAGTTGATGTTGGATGGCGCACCAAGGCTCAATTTGGCCTCATTTGTGACCACTTGGATGGAGCCTGAGTGTGACAAGCTCATAATGGCCTCACTCAACAAGAACTATGTTGACATGGATGAGTACCCTGTCACCACTGAGCTTCAGAATCGGTGTGTCAATATAATAGCAAATCTATTCAATGCTCCTCTAAGTGAAGAAGAGACTGCAGTAGGTGTGGGAACTGTGGGATCATCAGAGGCAATAATGTTAGCAGGTCTGGCTTTTAAAAGGAAATGGCAGACAAAGAGAAAAGCAGAAGGAAAACCATATGATAAGCCCAACATTGTTACTGGGGCCAATGTGCAGGTTTGTTGGGAAAAATTTGCAAGGTACTTTGAGGTAGAGCTCAAGGAAGTGAAACTCACCGAGGGATACTATGTGATGGACCCTGTGAAAGCAGTTGAAATGGTGGATGAGAACACCATTTGTGTTGCAGCCATTTTGGGTTCAACTATGACCGGAGAGTTTGAGGATGTGAAGCTTCTCAATGAACTTCTCACTGAAAAGAACAAGAAGACAGGTTGGGATACCCCAATTCATGTAGATGGTGCCAGTGGGGGATTTATTGCCCCATTTCTCTATCCTGATCTTGAATGGGATTTTCGTCTGCCATTGGTGAAAAGCATCAATGTTAGTGGTCACAAGTATGGTCTTGTCTACCCCGGTGTTGGTTGGGTTGTCTGGAGGAGTAAGGATGACTTGCCAGATGAACTTGTTTTTCACATAAATTATCTTGGATCTGATCAGCCAACTTTCACATTGAATTTCTCCAAAGGATCCAGTCAAATTATTGCTCAATATTACCAATTTATTCGGCTTGGCTTTGAGGGTTACAAAAATATCATGGAAAATTGCTGGGACAATGCAAGAACACTGAGGAAAGGAATTGAGAAAATAGGAAGGTTTAACATCATCTCTAAGGACATAGGGGTGCCACTTGTGACCTTCTCCTTGAAAGACAGTAGCCAACACACAGTGTTTGAGATAGCAGATCAGCTGAGAAAATTTGGCTGGATTGTTCCTGCCTACACAATGCCACCAGATGCACAGCACATCGCGGTCCTCAGGGTAGTGGTCAGGGAGGATTTCAACCATGGCTTGGCTGAGAGACTTGCTGCAGACATAGACAAGGTTGTGAAGCTCTTAGACACACTCCCTAGCCTCACAACCAAAGCCACTCATGTCACACCCATCACCAGTGAGACTGATGAGAAGATCAAGAAGAGTGCAGTAGAGACTGAAAGAGACATTGCTGTGTACTGGAAGCGACTTGTGGAGGGGAAGAGACATGGAGCATGCTAG 1644 0.4398 MASIVDVYGPHKVEQKRKFQSPYISGGSISAEFSVYNAFGSLAEKKAYSMVITSTATHPDAHDECISSTFASRYVRQSIPKFKMPENSIPKDAAYQLINDELMLDGAPRLNLASFVTTWMEPECDKLIMASLNKNYVDMDEYPVTTELQNRCVNIIANLFNAPLSEEETAVGVGTVGSSEAIMLAGLAFKRKWQTKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLTEGYYVMDPVKAVEMVDENTICVAAILGSTMTGEFEDVKLLNELLTEKNKKTGWDTPIHVDGASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYPGVGWVVWRSKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCWDNARTLRKGIEKIGRFNIISKDIGVPLVTFSLKDSSQHTVFEIADQLRKFGWIVPAYTMPPDAQHIAVLRVVVREDFNHGLAERLAADIDKVVKLLDTLPSLTTKATHVTPITSETDEKIKKSAVETERDIAVYWKRLVEGKRHGAC 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02908 547 FunFam Glutamate decarboxylase 118 412 - -
Spst4g02908 547 Gene3D - 118 412 IPR015421 GO:0003824
Spst4g02908 547 FunFam Glutamate decarboxylase 413 500 - -
Spst4g02908 547 CDD DOPA_deC_like 111 491 - -
Spst4g02908 547 FunFam Glutamate decarboxylase 55 117 - -
Spst4g02908 547 Gene3D - 50 117 - -
Spst4g02908 547 PANTHER GLUTAMATE DECARBOXYLASE 50 547 IPR010107 GO:0004351|GO:0006536|GO:0030170
Spst4g02908 547 SUPERFAMILY PLP-dependent transferases 59 495 IPR015424 -
Spst4g02908 547 Pfam Pyridoxal-dependent decarboxylase conserved domain 85 433 IPR002129 GO:0016830|GO:0019752|GO:0030170
Spst4g02908 547 Gene3D - 413 500 - -
Spst4g02908 547 NCBIfam glutamate decarboxylase 68 496 IPR010107 GO:0004351|GO:0006536|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02908 Spst-Chr4 68717850 68722964 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02908 56 547 Calmodulin-binding Proteins AT3G17760 78.455 0.0 813
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02908 K01580 - gmx:100783047 924.85