Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02900 ATGGATGATTCGTCCAATTCATGTGTGAGGAAGGCTATAGGAGGCAGTTGGCTCTCTGTAAGTCAAGGAATTTCAGAGGATACATCTGATCTTGTATCAGGTTTTGCAACAATTGGGGATGGGTTGAGTGAATCAGTTGATTATCCAAATGAATATTGGGACTCTGATGAATATGATGATGATGAAGACGTTGGGTACATGAGACAACCCATTGAGGATGAGGCCTGGTTTTTGGCCCATGAAATTGATTACCCCAGTGATAATGAAAAGGGGACAGGGCATGGAAGTGTTCCAGATCCTCAAGAAAGAGGTACAGCCAAAGATGAGGAGGATGATCAATCTTTTGCTGAGGAGGATTCTTATTTCTCTGGTGAGCAATATATTCTACCAAAAAATGTTGAGCCGGTCACTTCAGACGATCCTATTGGTCTAACGATTACTGAAATTTATGGAAGAACCAATGGTGATGATGTAATGACTCAATATGACACACAACTGATGGACATTGAAGAACTGAATCTGATGCATATGGAACCTGTCAGGCAGGGCTTTGTCACTCACCAAAATGACCTCATCATGCTGGGAGATGGGAAGGCTCTGACTCATAGTGCAAGGCCACGAATTGAGGATGTGGAAGATGATCAACATGGTTCTGTTAGATCAATTGGAGTGGGGATCAACAGTGATGCTGCTGATATTGGTAGTGAAGTGCATGGAAGTTTGATTGGTGGTAGTAGTGAGGGGGATTTAGAATATTTTCGTGATCATGATATGCACAATGACTCCAAACGCACTTATCAGGATTTGGATAAGAGTTCTAGCAACAAATCAATAAAAAATAATAAGATAACTGACAAGAATGAATCAAATAAATATGTCATAGACAGTGATATGTATGCATGCTCACAGATAAAAACACATACCGATGGGAACTTTTCATTTCCCCAATCTGTTAGAGATGGCCAGATAGATCAGGCTGGTTCCAGTAAGTCTGTATGGGAGAGTAGTTGTAATGTAGATGAAACTGAAGAGTGTCTTAATGCCTTTGTGGGCTCTGATGACATGCTTTCATCTTGGAGGCGGAAGAGTATTGATTCTTCGCCTGTAAAAAGTTCTAGGGGTGAGAATAATGCTATTGTGGTAAGATCCAGAAATTCTTCTCCAACTACAGTCTCAAATTACGGGTATACGGATGGGGAACATGTCAAATTAGAAAAAGATGAAAAGAATAGTGTTGTAAGGGAAGACGATATAGGTGCATCACTAGAAGATGAAGAGGCAGCTGCTGTGCAAGAGCAGGTACGGCAAATAAAGGCCCAGGAGGAGGAATTTGAAACTTTCAATCTAAAGATTGTGCACAGGAAAAACAGAACTGGCTTTGAGGAGGACAAGAATTTTCATGTTGTTTTAAATTCCGTAATAGCTGGGCGGTATCATGTCACTGAGTATCTTGGGTCTGCTGCATTTAGCAAAGCTATACAAGCTCATGACCTGCACACAGGCATGGATGTTTGTGTTAAAATTATAAAGAACAACAAAGACTTCTTTGATCAAAGCCTTGATGAGATCAAGCTTCTTAAGTATGTCAACAAGCATGATCCTTCAGACAAGTTCCACCTTCTAAGATTGTATGATTATTTCTATTATAGAGAACATTTGTTAATAGTATGTGAACTGCTTAAAGCCAACTTATATGAGTTTCATAAGTTTAACCGAGAATCAGGGGGGGAAGTGTATTTCACTATGCCGAGGTTGCAGTCAATCACCATTCAGTGTTTGGAAGCACTGCAATTTTTGCACAGTCTTGGACTAATACATTGTGACTTGAAGCCAGAGAATATTTTGGTTAAAAGCTATAGCAGATGTGAAGTGAAGGTCATTGATCTTGGAAGTAGTTGTTTTGAGACAGATCACCTTTGTTCGTATGTTCAGTCCAGGTCTTATCGTGCTCCTGAAGTTATTTTGGGGCTTCCATATGATAAGAAGATTGATATCTGGTCACTTGGATGCATCTTGGCAGAACTTTGTACTGGCAATGTTCTCTTCCAAAATGATTCTCCTGCAACATTACTTGCTCGGGTGATCGGGATCATTGGCCCAATTGATCAAAGTTTACTTGCCAAAGGACGGGATACATATAAGTACTTCACAAAAAACCATATGCTTTATGAACGGAATCAGGAAAGCAACAGATTAGAATACTTGATTCCCAAAAAGACATCATTGAGGCATAGATTACCCATGGGAGACCAAGGCTTCATAGACTTTGTTGCACATTTGCTCGAGGTTATAGCTTCTACGTTATTAGATCTTGCACGGGGTTTGATACCAAGTTGGAAGCACCAGTTAAAAGCAAAGCTGGTGGCAATGTGTGAGACTCACTCAACACTTGCAAATTTCCTTTATTTTGGGTTGGAAGCAACCAAAGTGTATCTTGATGGTGTCGTGTAG 2451 0.4027 MDDSSNSCVRKAIGGSWLSVSQGISEDTSDLVSGFATIGDGLSESVDYPNEYWDSDEYDDDEDVGYMRQPIEDEAWFLAHEIDYPSDNEKGTGHGSVPDPQERGTAKDEEDDQSFAEEDSYFSGEQYILPKNVEPVTSDDPIGLTITEIYGRTNGDDVMTQYDTQLMDIEELNLMHMEPVRQGFVTHQNDLIMLGDGKALTHSARPRIEDVEDDQHGSVRSIGVGINSDAADIGSEVHGSLIGGSSEGDLEYFRDHDMHNDSKRTYQDLDKSSSNKSIKNNKITDKNESNKYVIDSDMYACSQIKTHTDGNFSFPQSVRDGQIDQAGSSKSVWESSCNVDETEECLNAFVGSDDMLSSWRRKSIDSSPVKSSRGENNAIVVRSRNSSPTTVSNYGYTDGEHVKLEKDEKNSVVREDDIGASLEDEEAAAVQEQVRQIKAQEEEFETFNLKIVHRKNRTGFEEDKNFHVVLNSVIAGRYHVTEYLGSAAFSKAIQAHDLHTGMDVCVKIIKNNKDFFDQSLDEIKLLKYVNKHDPSDKFHLLRLYDYFYYREHLLIVCELLKANLYEFHKFNRESGGEVYFTMPRLQSITIQCLEALQFLHSLGLIHCDLKPENILVKSYSRCEVKVIDLGSSCFETDHLCSYVQSRSYRAPEVILGLPYDKKIDIWSLGCILAELCTGNVLFQNDSPATLLARVIGIIGPIDQSLLAKGRDTYKYFTKNHMLYERNQESNRLEYLIPKKTSLRHRLPMGDQGFIDFVAHLLEVIASTLLDLARGLIPSWKHQLKAKLVAMCETHSTLANFLYFGLEATKVYLDGVV 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02900 816 ProSiteProfiles Protein kinase domain profile. 478 754 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g02900 816 FunFam Putative serine/threonine-protein kinase dyrk2 472 559 - -
Spst4g02900 816 Gene3D Transferase(Phosphotransferase) domain 1 532 763 - -
Spst4g02900 816 ProSitePatterns Serine/Threonine protein kinases active-site signature. 604 616 IPR008271 GO:0004672|GO:0006468
Spst4g02900 816 MobiDBLite consensus disorder prediction 262 283 - -
Spst4g02900 816 PANTHER DUAL SPECIFICITY PROTEIN KINASE 17 763 - -
Spst4g02900 816 FunFam Serine/threonine-protein kinase ppk15 557 769 - -
Spst4g02900 816 Pfam Protein kinase domain 478 689 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g02900 816 SUPERFAMILY Protein kinase-like (PK-like) 467 762 IPR011009 -
Spst4g02900 816 SMART serkin_6 478 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g02900 816 Gene3D Phosphorylase Kinase; domain 1 472 559 - -
Spst4g02900 816 MobiDBLite consensus disorder prediction 84 117 - -
Spst4g02900 816 MobiDBLite consensus disorder prediction 363 396 - -
Spst4g02900 816 MobiDBLite consensus disorder prediction 363 398 - -
Spst4g02900 816 CDD PKc_DYRK_like 478 763 - -
Spst4g02900 816 Coils Coil 430 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02900 Spst-Chr4 68658806 68664267 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02900 475 711 MAP Kinase Gene Family AT3G18040 31.765 1.33e-25 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Spst4g02900 Pkinase 6e-43 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00626 3 9832405 9842166 Spst4g02900 4 68658806 68664267 PCT