Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02883 ATGTTAGCCAATAACTTATCTCCATCGTCAGTTCCCACTTCTGAGCCTTTTCCCTGCACTGAAAATGGCACTGCCACCAATAAAAGGAAGAGAAGGCCCGCAGGAACACCAGATCCAGATGCAGAGGTGGTGTCCCTCTCGCCAAAGACTTTGTTGGAATCGGATCGTTATGTGTGTGAGATCTGCAACCAGGGGTTCCAGAGGGACCAGAACCTTCAGATGCATAGGAGGAGGCACAAGGTGCCATGGAAGCTGTTGAAGAGGGAGACACCAGTGGTGAGAAAGAGAGTGTTTGTGTGTCCTGAACCAACTTGCTTGCACCATGACCCTTGTCATGCCTTGGGTGATCTTGTTGGGATAAAGAAGCATTTCAGGAGGAAGCACAGCAATCACAAGCAATGGGTCTGTGAAAGATGCTCCAAAGGCTATGCAGTGCAGTCTGATTACAAAGCACATCTCAAAACGTGTGGCACCCGGGGCCACTCCTGTGATTGTGGCCGCGTTTTCTCAAGGGTGGAGAGTTTCATTGAGCACCAAGATGCTTGCAACATGGGGAGGCTCAGGCCAGAATCTCAGCCACTTCAACCATCTGCATGCCTTTCTAGAACAGCCTCAAGCCCAAGTCCTTCAAGCGAAACCAATTTCAGCACAACTCCTTGGCCAACAAGAATGATAATACCAAAGCCAACAGAACCACCCACAATTTTCATGAATAACCCTACTGCTGCTATCACCACTGCTGAAACCTCATCCAAGAACAACAAACTCCATCCCAACTTGGATCTCCAACTCTCAACTCCCACCACCACCAACAACAACAACACATCAAATGTTGGAAACCCCATTGATGCTGCAATATCCACCTCACTATCACCTAAGAGGGATCATCATGAGAACCATTCAACCCATTTGCAACTCTCAATTGGGTCATCAGATGTGAGTGAGAAAAATGAATCGAACAGGAACTCATCAGAGAAGAGCAGCAACAGCAACAATGAGAAGCAGTCCAGCATGGCCTTGTTGAGGGTTCAAGAGCAAGCAAGGGAACACTTGAGGATTGCCATGGCTGACAAAGCATATGCTGAGGAAGCAAGGAAACAAGCCAAGAGGCAGATTGAACTTGCGGAACAAGAGTTCACAAACGCCAAGAGGATAAGACAACAAGCACATGCCGAACTCGACAAGGCCTACGCCTTGAAAGAACATGCAATGAAGCAAATCAACTCCACCATGCTCCAAATCACTTGCCACGCTTGCAAGCAACAATTCCAAGCTCGAAATGCAACCCCCGACGAGAATTCCTTGGTGTTGAGCTACGTGTCTTCTGCTATAACCACAGAAGGAGGAGAAGTAGAAAACGATAATGGAAAAGGTCATGGCAAAGAGAACTAA 1392 0.477 MLANNLSPSSVPTSEPFPCTENGTATNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRLRPESQPLQPSACLSRTASSPSPSSETNFSTTPWPTRMIIPKPTEPPTIFMNNPTAAITTAETSSKNNKLHPNLDLQLSTPTTTNNNNTSNVGNPIDAAISTSLSPKRDHHENHSTHLQLSIGSSDVSEKNESNRNSSEKSSNSNNEKQSSMALLRVQEQAREHLRIAMADKAYAEEARKQAKRQIELAEQEFTNAKRIRQQAHAELDKAYALKEHAMKQINSTMLQITCHACKQQFQARNATPDENSLVLSYVSSAITTEGGEVENDNGKGHGKEN 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02883 463 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 387 IPR031140 -
Spst4g02883 463 Gene3D Classic Zinc Finger 35 97 - -
Spst4g02883 463 Coils Coil 358 392 - -
Spst4g02883 463 SUPERFAMILY beta-beta-alpha zinc fingers 54 80 IPR036236 -
Spst4g02883 463 MobiDBLite consensus disorder prediction 1 44 - -
Spst4g02883 463 Gene3D Classic Zinc Finger 119 195 - -
Spst4g02883 463 MobiDBLite consensus disorder prediction 193 337 - -
Spst4g02883 463 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Spst4g02883 463 MobiDBLite consensus disorder prediction 194 223 - -
Spst4g02883 463 MobiDBLite consensus disorder prediction 235 287 - -
Spst4g02883 463 MobiDBLite consensus disorder prediction 1 24 - -
Spst4g02883 463 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Spst4g02883 463 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Spst4g02883 463 SMART c2h2final6 134 161 IPR013087 -
Spst4g02883 463 SMART c2h2final6 98 128 IPR013087 -
Spst4g02883 463 SMART c2h2final6 57 79 IPR013087 -
Spst4g02883 463 MobiDBLite consensus disorder prediction 303 337 - -
Spst4g02883 463 FunFam protein indeterminate-domain 12-like 36 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02883 Spst-Chr4 68524314 68527040 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02883 20 453 C2H2 Transcription Factor Family AT2G01940 57.175 5.07e-154 443
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst4g02883 zf-C2H2 0.0044 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02883 K25871 - gmx:100800187 802.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00629 3 9863866 9866077 Spst4g02883 4 68524314 68527040 PCT