Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02880 ATGGAAAACTCTTCATCGTCATCTTCAAACTCAGTCTATCGAGAGTGTCTCCGCAACCATGCAGCGAGCCTCGGCAGCTACGCGACAGATGGTTGCGGAGAGTTCACTCTCGATGACGTCTCTTCTCCCTCTCTCCAATGTGCGGCCTGTGGCTGCCACCGGAACTTTCATCGCAAGATTGCGGTGGAAGGAATGGTGGGTGGAGGGAGCGGGGACATGATGGAGTACTCGGGAGGGGACGTGGGAAGGATGGAGGTGGGGGAGAGGAGCAGCAGGAAGAGGTTCAGGACGAAGTTCAGTGCCGAGCAGAAGGAGAAGATGCTGGGGTTTGCAGAGAAGCTGGGGTGGAAGCTGCAGAGGAAGGAGGTGGATGATGAGATTGAGAGGTTTTGTAAAAGTGTTGGAGTGACTAGACAGGTTTTCAAGGTGTGGATGCATAACCATAAGAACAACTCTAATTCTTCTAACTCTTCTGCTAATCTCTCTTCTCTCACTCAGTGA 501 0.523 MENSSSSSSNSVYRECLRNHAASLGSYATDGCGEFTLDDVSSPSLQCAACGCHRNFHRKIAVEGMVGGGSGDMMEYSGGDVGRMEVGERSSRKRFRTKFSAEQKEKMLGFAEKLGWKLQRKEVDDEIERFCKSVGVTRQVFKVWMHNHKNNSNSSNSSANLSSLTQ 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02880 166 SUPERFAMILY Homeodomain-like 85 151 IPR009057 -
Spst4g02880 166 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 13 60 IPR006456 -
Spst4g02880 166 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 13 59 IPR006456 -
Spst4g02880 166 Gene3D - 77 156 - -
Spst4g02880 166 FunFam Zinc-finger homeodomain protein 2 81 154 - -
Spst4g02880 166 Pfam ZF-HD protein dimerisation region 12 59 IPR006456 -
Spst4g02880 166 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 7 151 - -
Spst4g02880 166 NCBIfam homeobox domain, ZF-HD class 92 150 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02880 Spst-Chr4 68496610 68497110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02880 13 149 ZF-HD Transcription Factor Family AT1G14440 41.711 1.09e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Spst4g02880 ZF-HD_dimer 2.5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02880 - - vun:114182488 270.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00631 3 9875159 9875677 Spst4g02880 4 68496610 68497110 PCT