Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02871 ATGAAGACTTTCTACTCAATTCAAATACCACACCATTTTTATTGTGCAAGATTCTTCTCTTACACAACCAAAAGGACTCAACTTTCTTTTCCTGCAAAGGTCTTCATTTGCCAGGCAAAATCGGGCATAGATGGGTCATTGAATTTAAAAGTGGTATCTCCCACTCTGTTAGTAGCTGAGAAGGAAGAAGCCAAGGCTGTATTGACCTTGTTTTTGAAGAAACAAGGTTTGAGCAATGCGGTTGCTGCTAGAACCATCAACAAGTCAGATCTTTTTATTGATCATCTTGTCTCAAAGCTTCATTCTAAACACAAATCTTGGTATCTTGCAGGAAGAGAACTTACAACTTTGGAGATCAGGGATGCTCTTATCCCTTATCTTGAATCTCTTTTTGACGAGCATGGTGACATTCTAGTGGATGTAGTGGAAAACTATCCAAATCCACCTGTTCAGGACAAATCAGCAGTGTCAGTTCCTCCTTCTTGTCCTGTGTTAGACTCTAGGAAGCTTAAAGCTGTGTCACTAGCGAGTGAGATAGACCCAGATGGTGGCAATCTGCGACCTCATGTTGTCTATCTCATGGAACTTGGTATGGATATTGAGCAGATTCAGAGTATTACAAATAGATTCCCAGCTTTTGCCTACTATAGCTTGGAGGGTAAAATTAAGCCAGTCGTTGAGTTTTTTCTTGAACTGGGAGTGCCAAGAGAGCGCATTCCCGCTATCCTCAGTAAAAGGCCTCAATTATGTGGTATCAGTCTATCTGAAAATCTTAAACCAACCATGAAGTTCTTAGAATCATTGGGTGTTGACGAGAAGCAATGGCCAAAGGTGATCTATCGCTTCCCGGCCCTGCTAACTTATAGCAGGCAGAAAGTGATGGAAAGCATAAATTTCCTCCATGAATTGGGCCTCTCTAAAGAGAACATAGGTAAAATTTTAACTCGTTGCCCCAATATCGTTAGTTACAGTGTAGAGGACAATCTCCGACCCACAGCTAAGTACTTCCGTTCTTTGGGGGCTGATGTTGGCATTCTTCTATTCAGATGCCCACAAAATTTTGGTCTTAGCATTGAGGCCAACCTAAAACCTATAACAGCATTTTTCTTGGAGAGGGGATACACTTTGGATGACATTGGGACCATGATTTCAAGATATGGAGCTTTGTATACTTTCAGCTTGACTGAAAATTTGATTCCAAAATGGGATTTCTTTTTGACCACAGGATACCCAAAATCTGAGCTGGTTAAGTTCCCTCAGTATTTTGGATACAGTTTAGAGAAAAGGATTAAACCTAGATTTGCAATTGTGGAGAAATCTGGAGTAAAGTTACTGTTGAACCAGGTTCTTTCACTGTCAAGCAACAACTTTGACAAGGCCTTGATAAAGAAAATGAAGAAAATGCATGATGGTTAG 1416 0.4047 MKTFYSIQIPHHFYCARFFSYTTKRTQLSFPAKVFICQAKSGIDGSLNLKVVSPTLLVAEKEEAKAVLTLFLKKQGLSNAVAARTINKSDLFIDHLVSKLHSKHKSWYLAGRELTTLEIRDALIPYLESLFDEHGDILVDVVENYPNPPVQDKSAVSVPPSCPVLDSRKLKAVSLASEIDPDGGNLRPHVVYLMELGMDIEQIQSITNRFPAFAYYSLEGKIKPVVEFFLELGVPRERIPAILSKRPQLCGISLSENLKPTMKFLESLGVDEKQWPKVIYRFPALLTYSRQKVMESINFLHELGLSKENIGKILTRCPNIVSYSVEDNLRPTAKYFRSLGADVGILLFRCPQNFGLSIEANLKPITAFFLERGYTLDDIGTMISRYGALYTFSLTENLIPKWDFFLTTGYPKSELVKFPQYFGYSLEKRIKPRFAIVEKSGVKLLLNQVLSLSSNNFDKALIKKMKKMHDG 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02871 471 FunFam Transcription termination factor MTERF5 chloroplastic 247 467 - -
Spst4g02871 471 Gene3D Transcription termination factor 3, mitochondrial 247 468 IPR038538 -
Spst4g02871 471 Pfam mTERF 290 457 IPR003690 GO:0003690|GO:0006355
Spst4g02871 471 Pfam mTERF 54 292 IPR003690 GO:0003690|GO:0006355
Spst4g02871 471 Pfam mTERF 186 364 IPR003690 GO:0003690|GO:0006355
Spst4g02871 471 PANTHER CGI-12 PROTEIN-RELATED 123 463 IPR003690 GO:0003690|GO:0006355
Spst4g02871 471 SMART mt_12 276 306 IPR003690 GO:0003690|GO:0006355
Spst4g02871 471 SMART mt_12 311 342 IPR003690 GO:0003690|GO:0006355
Spst4g02871 471 SMART mt_12 344 375 IPR003690 GO:0003690|GO:0006355
Spst4g02871 471 SMART mt_12 380 411 IPR003690 GO:0003690|GO:0006355
Spst4g02871 471 SMART mt_12 412 443 IPR003690 GO:0003690|GO:0006355
Spst4g02871 471 SMART mt_12 204 235 IPR003690 GO:0003690|GO:0006355
Spst4g02871 471 SMART mt_12 240 271 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02871 Spst-Chr4 68421578 68424396 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Spst4g02871 mTERF 6.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02871 K15031 - gmx:100781900 814.683