Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02865 ATGGTGTTGGGATGGAGGAGGAGGAAGGGAAACAGCAAGCAAAGCAAAGGTGGCAAACTCGTGATGGAGTTGGTGGTTCCCAACCACTTCAGGTGTCCAATTTCTCTTGACTTGATGAAGGATCCCGTGACATTGTCAACTGGGATAACCTATGATAGGGAGAGTGTGGAGAGGTGGTTTGAAGAAGGGAACATCACATGTCCGGTTACTAACCAGGTTGTGAGGAACTTTGACATGATTCCAAACCATTCTCTCAGGATAATGATCCAAGATTGGTGTGTGGAGAATAAGCAACATGGGGTGGAGAGGATTCCCACACCAAGGATACCAATTAGCCCAATTGAGGTTGCTGAGCTTCTGATGCAAGTGAAGGACTCAGCAAGGGCTTTGGACCAATATGGCTGCCTTGAATTGGTGCAGAAAATGAAGAAGTGGGGTGGGGAGAGTGAGAGGAACAAGAGGTGCATAGTGGACAATGGAGCACCTGTGGCTTTGGCTTCATCCTTTGATGCATTTGCCAATGACTCAGTGGAGAGGAATGTGGTGGTTCTGGAAGAGATTTTGTCAGCCCTCAATTGGATGTTTCCACTTCAATTGGAGGCACACAAGTCCTTGGGGTCTTTAGCTTCTCTAAGTTGCATGGTTTGGTTCTTGAAGCATCAAGATCTCTCAGGGAAAGAGAAGTCCATTGTGGCATTGAAAGAGCTTCTTTCCTTTGGTGATGTGCAGCATGTGGAGGCCTTGTCACAAATTGAAGGGGTCAATGAGCTCTTGGTGGAGTTCATCAACAAGAGGGTTAGTCCAACCATCACAAAGGCCTCATTGAGGGTGGTTTGGTACTTGGTCTCATCCTCATCCAATTCCAGTCAGAAGATGAAATTGGCATTTGTTGAACTGGGTTTGGTTTCTTCTTTGCTTGAAATTCTCATTGACTCGGACAAGAGCCAGTATGAGAAGGCTTTGGCAATTTTGGACTCTCTATGCAGCAGTGAAGAAGGAAGGAACAAAGCTTGTGGGAATGATCTAACAATTCCTCTTTTGGTGAAGAAAATTCTAAGAGTTTCACCATTGACCACAGACTATTCTGTCTCTGCCCTTTGGAAGCTGTGCAAGTTTGGAGAAAAAGATGAAGGAAGAACCCTTGTCGAGGCCCTTCAAGTTGGAGCCTTTCAGAAACTCCTGTTGGTGTTGCAAGTTGGTTGTGGTGATGAGACTAAGGAGAAAGCAACTGAACTTCTCAAAATGATGAATCCTTACAGGGCTGAATTGGAATGCATAGACTCAGATTACAAGAATGTTAAGAGATCATTTTAA 1314 0.4505 MVLGWRRRKGNSKQSKGGKLVMELVVPNHFRCPISLDLMKDPVTLSTGITYDRESVERWFEEGNITCPVTNQVVRNFDMIPNHSLRIMIQDWCVENKQHGVERIPTPRIPISPIEVAELLMQVKDSARALDQYGCLELVQKMKKWGGESERNKRCIVDNGAPVALASSFDAFANDSVERNVVVLEEILSALNWMFPLQLEAHKSLGSLASLSCMVWFLKHQDLSGKEKSIVALKELLSFGDVQHVEALSQIEGVNELLVEFINKRVSPTITKASLRVVWYLVSSSSNSSQKMKLAFVELGLVSSLLEILIDSDKSQYEKALAILDSLCSSEEGRNKACGNDLTIPLLVKKILRVSPLTTDYSVSALWKLCKFGEKDEGRTLVEALQVGAFQKLLLVLQVGCGDETKEKATELLKMMNPYRAELECIDSDYKNVKRSF 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02865 437 SUPERFAMILY ARM repeat 151 416 IPR016024 -
Spst4g02865 437 SUPERFAMILY RING/U-box 25 102 - -
Spst4g02865 437 SMART Ubox_2 29 92 IPR003613 GO:0004842|GO:0016567
Spst4g02865 437 FunFam RING-type E3 ubiquitin transferase 26 97 - -
Spst4g02865 437 Pfam U-box domain 26 97 IPR003613 GO:0004842|GO:0016567
Spst4g02865 437 CDD RING-Ubox_PUB 27 79 IPR045210 -
Spst4g02865 437 Gene3D - 115 417 IPR011989 -
Spst4g02865 437 ProSiteProfiles U-box domain profile. 25 99 IPR003613 GO:0004842|GO:0016567
Spst4g02865 437 PANTHER WDSAM1 PROTEIN 22 417 IPR045185 GO:0061630
Spst4g02865 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 104 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02865 Spst-Chr4 68387680 68388993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02865 23 437 U-box Gene Family AT5G37490 45.952 1.65e-114 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02865 - - gmx:100794340 780.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00635 3 9906230 9907558 Spst4g02865 4 68387680 68388993 PCT