Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02859 ATGGCCCTCATTCGCCACCGTTGTTGCCCTAACCTCCCCCATCTGGAGCTCTCTGAGCGACGCCCCATTTTCTCTCTCCCCTCCACCGCCACTATCAAACCTTCCAATGACGATGCCATCACCATTGCTGACCTTGAAAAGCTCGCTATCCTTGGCTATGGTAATGGCGGCACTGTCTACAAGGTTTGCCATAAAGCCACCTCTGCCACCTTTGCACTGAAGATTATCCGTAGCAACATTGACATCAACACGCGCCGTCGTGCCCTTACAGAAATCTCAATCCTTCGTCGTGCCACCGACTGCCCCAATGTGGTTCGTTTCCATGGTTGCTTCGAGAAGCCCATTGGAGAACTGGCGATCCTCATGGAGTACATGGACGGTGGCAGCCTTGAGACTGCCCTTGCCACCCACGGCAAGTTCTCCGAGGAGAAACTTTTCTTAGTGGCTCGTAGCATCCTCAATGGCCTTGCGTATCTCCATGCACACAACATCGTTCATCGCGACATTAAGCCAGGAAATATCCTTGTAAACACCAAGGGTGAGGTGAAAATTGCAGACTTTGGAGTAAGTAAACTCATGAATCACACCTTCGAAATGTGTTACTCTTATGTTGGTACAAACGCTTACATGAGTCCTGAACGGTTCAACCCAGATGCTTATGGAGGGAGTTATAATGGTTTTGCTGCGGATATATGGAGTTTTGGTTTAACCCTTTTTGAACTCTTCGTTGGTCACTTTCCATTTCTTGAACCGGGTCAACGACCCAATTGGGCCACCCTCGTGTGTGGCATTTGCTTCAATGACCCACCGACCATGCCGGAGACTGCGTCACCGGAGCTTCGCAACTTCATCGCGTGTTGCCTGAAAAAGGAGCCTAGTGAGAGGTGGTCAACAACTCAACTCTTAAATCATCCGTTTATGTGCAAAGACTTCATAACTTGTTGA 945 0.4942 MALIRHRCCPNLPHLELSERRPIFSLPSTATIKPSNDDAITIADLEKLAILGYGNGGTVYKVCHKATSATFALKIIRSNIDINTRRRALTEISILRRATDCPNVVRFHGCFEKPIGELAILMEYMDGGSLETALATHGKFSEEKLFLVARSILNGLAYLHAHNIVHRDIKPGNILVNTKGEVKIADFGVSKLMNHTFEMCYSYVGTNAYMSPERFNPDAYGGSYNGFAADIWSFGLTLFELFVGHFPFLEPGQRPNWATLVCGICFNDPPTMPETASPELRNFIACCLKKEPSERWSTTQLLNHPFMCKDFITC 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02859 314 Pfam Protein kinase domain 46 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g02859 314 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
Spst4g02859 314 ProSiteProfiles Protein kinase domain profile. 45 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g02859 314 FunFam Mitogen-activated protein kinase 2 127 313 - -
Spst4g02859 314 SUPERFAMILY Protein kinase-like (PK-like) 44 309 IPR011009 -
Spst4g02859 314 Gene3D Phosphorylase Kinase; domain 1 24 126 - -
Spst4g02859 314 FunFam Dual specificity mitogen-activated protein kinase kinase 28 125 - -
Spst4g02859 314 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 39 309 - -
Spst4g02859 314 Gene3D Transferase(Phosphotransferase) domain 1 127 311 - -
Spst4g02859 314 PRINTS Tyrosine kinase catalytic domain signature 122 135 IPR001245 GO:0004672|GO:0006468
Spst4g02859 314 PRINTS Tyrosine kinase catalytic domain signature 229 251 IPR001245 GO:0004672|GO:0006468
Spst4g02859 314 PRINTS Tyrosine kinase catalytic domain signature 276 298 IPR001245 GO:0004672|GO:0006468
Spst4g02859 314 PRINTS Tyrosine kinase catalytic domain signature 158 176 IPR001245 GO:0004672|GO:0006468
Spst4g02859 314 CDD PKc_MAPKK_plant_like 43 307 - -
Spst4g02859 314 ProSitePatterns Protein kinases ATP-binding region signature. 51 74 IPR017441 GO:0005524
Spst4g02859 314 SMART serkin_6 45 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02859 Spst-Chr4 68348563 68349507 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02859 1 311 MAP Kinase Kinase Gene Family AT1G73500 54.459 1.12e-110 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Spst4g02859 Pkinase 9.8e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02859 K20604 - gmx:100804100 467.233