Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02854 ATGAGCTCTCACCCTCGGAGAGAAAGAAGGGGTTGGTCCAGGGTTCCATCTCAAGTTTTTACTCGTCAAGAATGGGTCCCCAGAGGGAGTGTTGCATCCACCCCTGTTGCTCAGCCATCAAATTTGCATCTAAGTAACAATGCCGATGTCGGTTCTTCCAATCAAGGGTTGGTTGTTGCTGCTATGCCTGTTATTCGCCATAGAAGCAATAATCATGGGGATGATGTTGGTTTATTCAGTCAAGAGGTGGCCATTGTTGCTCCGCCAGTATGCAAAAATCATGGGAATGGTGTTGGTTCTTCCAGTCAAGGGGTGGCTGTTGCTGCTCTGACGGTGACTCACCATAGAAGCAATAATCATGGGAACGATGTTGGTTTTTCCAGTCAAGGGGTGGTTGTTGATACTCTGCCGGTGACTCATCATCTAAGCAATAATCATGGGAACGATGCTGGTTCTTACTGTCGGGTAGTCGATACTGCTCCGTTGGTGACTCGCTACAGAAGCAACAATCATGGGAATGGTTCTTCCAATCAAGGGGTGGTTGTTACTGGTCCCTTGATGACTCACCATGGAATCAACAATCGTGGGAATGATGTTGGTTTTTCCAATCAAGGAGTAGTTGATCCTCTGCCTGCAGGTCGAGGTAGAAGCAATAATCATGGGAATCATAAGATGGAAAAGGAAAGGGGTAGGGGGAGGAGTAGTGGTTATCAAGTGGGGAAGGGATTGGGAGTGGGATTCAGAGACTCTAGTTTGCCTCAACTGGTGCAAGAGATTCAGGAGAAGCTCTTGAAAGGTACTGTAGAGTGCTTGATTTGCTTTGAAATGATCCAGAGGTCAGCTTCAGTTTGGTCTTGCTCGAGTTGCTACACTATCTTTCACGTGACTTGCATCAAGAAATGGGCCAAGGCACCTATTGCGATTGATTTGTCTGTCTCCGTGGAGAAGAATCAAGAACCTAATTGGCGTTGTCCTGGTTGCCAGTCTGTGAAATTTACCCCTTCAAAGGAGATTAAGTATGCTTGCTTTTGTGGGAAGAGGATAGACCCTCCATCTGATTTGTATCTAATACCACATTCATGTGGGGAACCTTGCGGGAAGCGTCTTGAGAGGGAGATCTTGGTTGCTGGAGGGAATAGGGATGATCTTTGCCCTCATACTTGCGTCTTGCAATGCCATCCAGGACCATGCCCTACCTGTAAAGCATTTGCTCCCCCGCGGTTGTGCCCTTGTGGGAAGAAAAATATTACCACCCGTTGCTCTGATCAACAGTCCGATCTTACCTGTGGACAGTGTTGTGGTAAACTTCTAGAATGTGGGCGCCATCACTGTGAACGAATTTGTCACCTGGGTCCGTGTGATCCTTGTCAGGTTTTAATCAATGGCTCTTGCTTTTGTGGTAAAAGAACCGATGCTATGACTTGTGGGGACATGGCTGTGAAGGGTGAAATTGAAGCAAACGGTGGGTTTTTTTCTTGTGGTTCCTATTGTCCAAAGAAACTTGGTTGTGGTAATCATGTCTGTGGAGAGATTTGTCATCCGAGCAGCTGTAGGGAATGTGAATCTTTACCTAGCCGAGTTAAGACATGTTACTGTGGGAAAACAAGGTTGGAGAATGAACGCCTAAGTTGTTTGGATCCAATACCAACCTGCTCTCAAGTATGTGGCAAGATCCTTCATTGTGGCCTGCATCGTTGTACAACAGCATGTCATTTTGGGGAGTGTCCACCTTGTTCTGTTCAAGTTTCACAGAAGTGTCGCTGTGGCACAACTTCCCGAACTGTGGAGTGTTACAAGACTAAGATGGAAAATGAGAACTTCATGTGTGAAAAGTCTTGTGGGAGAAAAAAGAACTGTGGAAGGCATCGGTGTAGTGACAAGTGTTGTCCATTTACTAAGCCAAATAGTAATGATAATAATATTACTGGGGATTGGGTTCCTCACTTTTGTTCAATGACATGTGGAAAGAAGCTAAGGTGTGGCCAACATTTGTGTGCATGTCTGTGTCACAGTGGTCATTGTCCACCTTGTTTTGAATCAATCTTTACCGAATTGACTTGTGCTTGTGGTAGGACTTCATTATCTCCACCTCTACCTTGTGGTACACTGCCTCCATCATGTCAGCTTCCGTGCTTAGTTCCTCAGCCATGTGGCCATTCAGGTTCACACAATTGCCATTTTGGAGACTGCCCTCCTTGTTCAGTGCCTGTAGCAAAAGAATGTGTTGGGGAACACGTAGTTCTTAGGAACATACCGTGTGGTTCTAAGGAAATTAGATGCAATCATCCTTGTGGGAAGACCAGGCAGTGTGGTTTACATGCGTGTGGCAGAACATGTCACCCCCCACCATGTGATAATTTATCTGGGATTGTGCAAGCTTTCAAAGTGCCATGTGGCCAAACATGTGGTGCTCCAAGAAGAAGCTGTCAGCACACGTGTATGGCTCCTTGTCACCCTTCATCTCCATGTCCAGATATAAGATGTGAGTTCCCTGTTACAATCACTTGCTCTTGTGGTAATATAATCGCAAATGTTCCTTGTGATGCTGGTGGTAGCAGTAGCAATTATAATGCTGATGCCATACATGAAGCTTCCATTATTCAAACATTGCCAGTACCACTTCAACCAGTCGATGCAAATGACAAGAAAGTTCCCCTTGGACAAAGAATGTTGATGTGTGATGTTGAATGTGCTAAGCTGGAACGCAAAAGGGTTCTCGCAGATGCTTTTGACATTACTGCTCCAAATCTGGATTCTCTACATTTTGGCGTGAATTCTCTTTCTTCTGAATTGCTTCTGGATATTTTCAGGCGTGAGCCAAAATGGGTTTTAGCTGTTGAAGAGAGGTGCAAAATTTTAGTACTAGGAAAGACTAGAGGAATTACACATGGTTTAAAAGTGCATGTCTTTTGTCCTATGACAAAGGCCAAAAGAGATGTAGTGAGGTCGATTGCTGAAAGATGGAGGCTTGCAGTCAATGCTGCAGGCTGGGAGCCAAAGCGGTTTATTGTAATTTCTGTCACCTCAAAATCAAAGACCCCAGCTCGACTGATAGGGATTAAGGGCACCACAACATTAAATGCACCCCTTCCTTCTGTATTGGATCCATTGGTTGATATGGACCCTTGGCTTGTTGTCTTGTTTCCAGACTTACCAAGGGATGCTGATATTAGTGCACTGGTGTTGAGGTTTGGTGGTGAGTGCGAGCTTGTTTGGTTAAATGACAAGAATGCTTTGGCTGTTTTTCATGATCCTGCCCGAGCTGCAACTGCAATGAGGAGGTTGGATCACGCAACAGTTTATCAGGGAGCTATTTTGGTTGCCCCGGTTGTTGGGGCATCGACGGGATCTTCAACTATCAATGCCTGGGGAACAGTTGAGGCAATGAAAGAAGGAGGAGCGCTGCCAGCATTGAAAGGCAATTCATGGAAAAAGGTTGTGGTTCAAGACCCTGGTTGGAAAGATTCATGGGGCAATGAAGAGTGGAGCATTGGTTCTATGAATGTTCAAACATCTGTTTGGAATAAAGAAGCGCCTATAGTTGCTGCTTCAAATCGTTGGAATGTATTGGACCAGGACTCGGCTTCAAGTTCATCTCGTACAAGAACTGACTCTTCCAGGAAGCAAACTGAAACTAGTTCTGTCTCAACGTTGGTGTCTACTGCAGGTGCCTCAAACGAAGTAGAAAACTGGGATGTAGCAGAAGGTAGTTGA 3714 0.454 MSSHPRRERRGWSRVPSQVFTRQEWVPRGSVASTPVAQPSNLHLSNNADVGSSNQGLVVAAMPVIRHRSNNHGDDVGLFSQEVAIVAPPVCKNHGNGVGSSSQGVAVAALTVTHHRSNNHGNDVGFSSQGVVVDTLPVTHHLSNNHGNDAGSYCRVVDTAPLVTRYRSNNHGNGSSNQGVVVTGPLMTHHGINNRGNDVGFSNQGVVDPLPAGRGRSNNHGNHKMEKERGRGRSSGYQVGKGLGVGFRDSSLPQLVQEIQEKLLKGTVECLICFEMIQRSASVWSCSSCYTIFHVTCIKKWAKAPIAIDLSVSVEKNQEPNWRCPGCQSVKFTPSKEIKYACFCGKRIDPPSDLYLIPHSCGEPCGKRLEREILVAGGNRDDLCPHTCVLQCHPGPCPTCKAFAPPRLCPCGKKNITTRCSDQQSDLTCGQCCGKLLECGRHHCERICHLGPCDPCQVLINGSCFCGKRTDAMTCGDMAVKGEIEANGGFFSCGSYCPKKLGCGNHVCGEICHPSSCRECESLPSRVKTCYCGKTRLENERLSCLDPIPTCSQVCGKILHCGLHRCTTACHFGECPPCSVQVSQKCRCGTTSRTVECYKTKMENENFMCEKSCGRKKNCGRHRCSDKCCPFTKPNSNDNNITGDWVPHFCSMTCGKKLRCGQHLCACLCHSGHCPPCFESIFTELTCACGRTSLSPPLPCGTLPPSCQLPCLVPQPCGHSGSHNCHFGDCPPCSVPVAKECVGEHVVLRNIPCGSKEIRCNHPCGKTRQCGLHACGRTCHPPPCDNLSGIVQAFKVPCGQTCGAPRRSCQHTCMAPCHPSSPCPDIRCEFPVTITCSCGNIIANVPCDAGGSSSNYNADAIHEASIIQTLPVPLQPVDANDKKVPLGQRMLMCDVECAKLERKRVLADAFDITAPNLDSLHFGVNSLSSELLLDIFRREPKWVLAVEERCKILVLGKTRGITHGLKVHVFCPMTKAKRDVVRSIAERWRLAVNAAGWEPKRFIVISVTSKSKTPARLIGIKGTTTLNAPLPSVLDPLVDMDPWLVVLFPDLPRDADISALVLRFGGECELVWLNDKNALAVFHDPARAATAMRRLDHATVYQGAILVAPVVGASTGSSTINAWGTVEAMKEGGALPALKGNSWKKVVVQDPGWKDSWGNEEWSIGSMNVQTSVWNKEAPIVAASNRWNVLDQDSASSSSRTRTDSSRKQTETSSVSTLVSTAGASNEVENWDVAEGS 1237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02854 1237 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 219 1160 IPR034078 GO:0003700
Spst4g02854 1237 CDD NF-X1-zinc-finger 361 422 - -
Spst4g02854 1237 MobiDBLite consensus disorder prediction 210 236 - -
Spst4g02854 1237 SMART znfxneu3 809 830 IPR000967 GO:0005634|GO:0008270
Spst4g02854 1237 SMART znfxneu3 503 522 IPR000967 GO:0005634|GO:0008270
Spst4g02854 1237 SMART znfxneu3 439 458 IPR000967 GO:0005634|GO:0008270
Spst4g02854 1237 SMART znfxneu3 561 580 IPR000967 GO:0005634|GO:0008270
Spst4g02854 1237 SMART znfxneu3 619 652 IPR000967 GO:0005634|GO:0008270
Spst4g02854 1237 SMART znfxneu3 660 679 IPR000967 GO:0005634|GO:0008270
Spst4g02854 1237 SMART znfxneu3 384 402 IPR000967 GO:0005634|GO:0008270
Spst4g02854 1237 SMART znfxneu3 770 800 IPR000967 GO:0005634|GO:0008270
Spst4g02854 1237 SMART znfxneu3 717 735 IPR000967 GO:0005634|GO:0008270
Spst4g02854 1237 SUPERFAMILY RING/U-box 260 333 - -
Spst4g02854 1237 MobiDBLite consensus disorder prediction 219 234 - -
Spst4g02854 1237 CDD NF-X1-zinc-finger 493 538 - -
Spst4g02854 1237 CDD NF-X1-zinc-finger 707 766 - -
Spst4g02854 1237 ProSiteProfiles Zinc finger PHD-type profile. 267 330 IPR019787 -
Spst4g02854 1237 CDD NF-X1-zinc-finger 798 847 - -
Spst4g02854 1237 MobiDBLite consensus disorder prediction 1192 1237 - -
Spst4g02854 1237 Pfam NF-X1 type zinc finger 503 520 IPR000967 GO:0005634|GO:0008270
Spst4g02854 1237 Pfam NF-X1 type zinc finger 660 677 IPR000967 GO:0005634|GO:0008270
Spst4g02854 1237 Pfam NF-X1 type zinc finger 802 827 IPR000967 GO:0005634|GO:0008270
Spst4g02854 1237 Pfam NF-X1 type zinc finger 770 785 IPR000967 GO:0005634|GO:0008270
Spst4g02854 1237 Pfam NF-X1 type zinc finger 717 734 IPR000967 GO:0005634|GO:0008270
Spst4g02854 1237 Pfam NF-X1 type zinc finger 561 579 IPR000967 GO:0005634|GO:0008270
Spst4g02854 1237 Pfam NF-X1 type zinc finger 439 457 IPR000967 GO:0005634|GO:0008270
Spst4g02854 1237 Pfam NF-X1 type zinc finger 386 401 IPR000967 GO:0005634|GO:0008270
Spst4g02854 1237 Pfam NF-X1 type zinc finger 619 630 IPR000967 GO:0005634|GO:0008270
Spst4g02854 1237 ProSiteProfiles Zinc finger RING-type profile. 270 328 IPR001841 -
Spst4g02854 1237 CDD NF-X1-zinc-finger 760 818 - -
Spst4g02854 1237 CDD RING-CH-C4HC3_NFX1-like 269 328 - -
Spst4g02854 1237 CDD NF-X1-zinc-finger 551 599 - -
Spst4g02854 1237 CDD NF-X1-zinc-finger 429 477 - -
Spst4g02854 1237 CDD NF-X1-zinc-finger 650 702 - -
Spst4g02854 1237 MobiDBLite consensus disorder prediction 30 50 - -
Spst4g02854 1237 MobiDBLite consensus disorder prediction 1192 1227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02854 Spst-Chr4 68263634 68267347 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Spst4g02854 zf-NF-X1 0.11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02854 K12236 - gmx:100789059 1976.83