Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02849 ATGGGTCTCTTCCTTTCTCGGAATTTGGCTTGCAAATTCATATACCCTTTTCTTTTCTCTAAGAAAGTTTCCAAGGATTTGTTTCCTAAGCAGTTGGAGAACATGATGTCTCTGGTGTCCCCTCGTACTGGCAGGCATTTGCAGCGATACGACCAAGGATGTCGCCAAGTTGTGGGGTGCATTCCTTACAGATACAAGAACAATGGAACAAAAGATAAGGAGTTAGAGGTTCTTGTGATTAGTGCTCAGAAAGGTCATGGAATGCAGTTCCCGAAGGGAGGTTGGGAAATTGATGAATCCATGGAACAAGCAGCTTTAAGGGAGACTATAGAAGAAGCTGGGGTCATCGGCAGTGTTGAAAGTAATTTGGGTAAATGGTATTACAAGAGCAAACGCCAACCCATAATGCATGAGGGATACATGTTCCCTTTGCTTGTTAAGAAGGAATTGGATAACTGGCCAGAGATGAACTCAAGAAAACGAAGATGGATGACTGTGGCTGAGGCAAAAGAAATATGCCCTTATGCTTGGATGAAGGAGGCTTTGGATGTATTGGTCATGAGACAAACTCAGCTGCACTCCAAAAAGGATCTGGATATGACACAAGCTTGGTACAAAGAGAATGATTTTGGTTGGGTGAGCTTAAGACCCTTTGGCCAAGACCACAAGAATACCACATTCCTTCAAGCAGTGTTTGAAGGGCATAGTGTGATTAGGCTAAAAGCTAAACAATTTGATGAATATGAAGAGGGGACAAATGTTGGGATTTACAATGACTTGGCTGTGGATTTTGACCTTAGAATCAGAGCCAACCATGGAAGGTTTGGGAGCAGTAGTTTCAGTCCACCCATTGTTCAGTGTCGCAGTTTGAGGGTTCCTTTGATTTCTATTGCTAAATCAACACCTCCATTTAGTGTCATCAAATGCAACACTGGGGCTTTCTTTGGTTCAGGTATCCTCTTTTGGAGGAGGCCATCATATTCAAGATATTATCATACATTAAATCTAGACACTTCGTTTAACAAGGATTCCAAACATGATTCACCATATTATGGAAGACTAAAACGCTCCACTGAACCCAACTTCATTGGCGTTGCAGCACTGGTTATTTCTTCTCAGATCGAATCTGTCAATCCTTATGTTTTGTATAGAACAAGAAAATCTCCCTTGGAAAAGTTCATGGAAAAAGCATATGCCAAACTCATCCATATCAAACTTATTATTACATACCAAAATGTTTCATCATTGACAATATCTCAAATCAACGTAACAATGCCTTGCAAACCCCGCTGCAGTTTTCGCTGCATCTACGGCACAACCTGCTTCTTTATATTCATATTCATGCTTTCCTTCTTCCTCTTCCTGATAATCATCAACCCCTTAAGAGTCAAGTTCTCCATAACTGAAGCCTCTCTGACACAGTTCAACCTCACCAGCAACAACACATTGTATTACAACTTCAAGGTCAATATCACTGTGAGAAACCCTAACAAGCATGTCATAGTGTACTACAGGAGGATCACAGCAATAGCTTGGTACAAAGACAATGATTTTGATAGGGTGAACTTGACACCCTTTGACCAAGGCCACAAGAACACCACCTTTCTTCAAGCAGCTTTTGAAGGGCAAAGTGTGATGAGGCTCCAACCTAAACAACTTGATGAGTATAAAGAAGAGACTAGTGTGGGAGTTTACAATGACTTGGCTATGGATTTGGACCTTACTATCAGAGTCAAGTTTGGAATGTTCGAGAAGGGACAGTTCAATCCAACCATTGTTCAGTGTCGTCTTTCGAAGGTTCCTTTGAATTTTAATGGTAAATCAGCACCTTCTTTTAGTGTCATCAGGTGCATCACTGGTAGTTTTCTTCCAAGATAG 1878 0.4121 MGLFLSRNLACKFIYPFLFSKKVSKDLFPKQLENMMSLVSPRTGRHLQRYDQGCRQVVGCIPYRYKNNGTKDKELEVLVISAQKGHGMQFPKGGWEIDESMEQAALRETIEEAGVIGSVESNLGKWYYKSKRQPIMHEGYMFPLLVKKELDNWPEMNSRKRRWMTVAEAKEICPYAWMKEALDVLVMRQTQLHSKKDLDMTQAWYKENDFGWVSLRPFGQDHKNTTFLQAVFEGHSVIRLKAKQFDEYEEGTNVGIYNDLAVDFDLRIRANHGRFGSSSFSPPIVQCRSLRVPLISIAKSTPPFSVIKCNTGAFFGSGILFWRRPSYSRYYHTLNLDTSFNKDSKHDSPYYGRLKRSTEPNFIGVAALVISSQIESVNPYVLYRTRKSPLEKFMEKAYAKLIHIKLIITYQNVSSLTISQINVTMPCKPRCSFRCIYGTTCFFIFIFMLSFFLFLIIINPLRVKFSITEASLTQFNLTSNNTLYYNFKVNITVRNPNKHVIVYYRRITAIAWYKDNDFDRVNLTPFDQGHKNTTFLQAAFEGQSVMRLQPKQLDEYKEETSVGVYNDLAMDLDLTIRVKFGMFEKGQFNPTIVQCRLSKVPLNFNGKSAPSFSVIRCITGSFLPR 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02849 625 Pfam NUDIX domain 74 181 IPR000086 -
Spst4g02849 625 SUPERFAMILY Nudix 55 185 IPR015797 -
Spst4g02849 625 PANTHER DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE 42 190 - -
Spst4g02849 625 ProSitePatterns Nudix box signature. 93 114 IPR020084 GO:0016787
Spst4g02849 625 CDD Nudix_Hydrolase_9 56 179 IPR047198 GO:0016462
Spst4g02849 625 FunFam Nudix hydrolase 17, mitochondrial 40 188 - -
Spst4g02849 625 ProSiteProfiles Nudix hydrolase domain profile. 53 186 IPR000086 -
Spst4g02849 625 Pfam Late embryogenesis abundant protein 490 582 IPR004864 -
Spst4g02849 625 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 41 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02849 Spst-Chr4 68192782 68200982 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02849 463 602 SNARE and Associated Proteins AT1G32270 32.857 7.21e-17 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02849 K07766 - gmx:100777839 394.045