Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Spst4g02826 | ATGGAGCCATCCTCGATCTCCCCACCGCCAGCTCCGCCTGCCACCGCCGTCCCCTTCCCAGCTGACCCCAACGACCACCTCCCGCCGCCCATTGCCGAACCACCGGCCAACCACCCACCCTACGCTGAGATGATATACACGGCAATCGAGGCGCTGAAGGAGAAGGACGGTTCGAGCAAGAAGGCTATAGGGAAGTACATGGAGCAAGTTTACAAGGAGCAGCTTCCACCGAATCACTCAACCTTGTTGACTCAGCACTTGACTCGGATGAAAAACAGTGGAATGCTCGTGATGGTGAAGAAGTCCTACGCGCTTCCTAGATCTGCTGCTGCTGCGGAGGCCGGTGCGGCTGGGCCGTCTGCTTCAACCACTCCCAGGCCCAGAGGGCGGCCTCGCAAGGCCCAAACCCCTGTCCACAACTTGCCTCAGCCTCTGGCTCTGGCGCAAACCGAGGACGCTGTAATCCCGTCGGTTCAGCAGAATGCTGAGCCTGTCTGGGCCGCGCTTGGGCTTTCTGACGAGCCTGTGCAAACTGAGAGCACCAAGAAACGTCCGGGCCGTCCGAAGAAGTTCGCCACAGGGGGCTCTGGAACGGGCCGGAGAGGCCGTCCTGTTGGTTCTGGAAAAGGCGCGGGTCGTCCTCCTAAGCCTAAGCCCATTGCTTTAGATACTTCTGCTTCTGTCGGGCCGAAGAGACGCCCGGGTCGCCCGCCGAAGAACCAGACCCAAGCAACTCAAATCCCTTTTGCTCCATCTACACCTACTGCAGCTACCGCACTGGACTCGGAGCCCGTGGCTGAACCGGTTCCTGCTGAGGATGGAATTTTACTCGGGCCTAGAGTACGGGCACGACCGAAGAAGTTTGCTGATGAGATCATTTCCTCCGGACGAGGCAGGGGAAGGGGTCGCGGACGAGGCCGTGGGCGTGGCTTTGCTTTGCTGCCCAGAAGGCCCGGAGCTAGGTCCGTCGGTCGTCCTAGGAAGGGGTCAACTTTTGCTGGACCTTCACAAAATGCTGCTAATGAAGAGCTCAAGAGGAAGCTTGAACACTTTCAATCGAAAGTGAAGGAATCTCTGGCAGTGATTAAGCCTCATTTTAACCATCAAAGTCCAGTCACTGCAATTGCAGCTATTCAAGAGTTGGAAGAGCTGGGAACTATGGACCTCAATGCACCACTAAGGGATGATACAATTCCACAGCAACAGGAGCTGTCACCGCCACAGGCACCAGTGCAGCTACCACAGCAACAACCTCCACCACCACAGCAGCAGTCACCACAGCAACACCTGGCACCACCACCACTGCAACCGCAGCCACAGCTATTTCAGCAACCATTTCCCTCATTTCAGCTGCAGCAGCCATTCCATCAGCAGCAGCCACAGCTGCCGTTCCAGCAGCCACCACAGCAGCACCAGCTATTCCAGGCACCACCATCGCACCACCAACAGTTTCATCCTTAG | 1461 | 0.5749 | MEPSSISPPPAPPATAVPFPADPNDHLPPPIAEPPANHPPYAEMIYTAIEALKEKDGSSKKAIGKYMEQVYKEQLPPNHSTLLTQHLTRMKNSGMLVMVKKSYALPRSAAAAEAGAAGPSASTTPRPRGRPRKAQTPVHNLPQPLALAQTEDAVIPSVQQNAEPVWAALGLSDEPVQTESTKKRPGRPKKFATGGSGTGRRGRPVGSGKGAGRPPKPKPIALDTSASVGPKRRPGRPPKNQTQATQIPFAPSTPTAATALDSEPVAEPVPAEDGILLGPRVRARPKKFADEIISSGRGRGRGRGRGRGRGFALLPRRPGARSVGRPRKGSTFAGPSQNAANEELKRKLEHFQSKVKESLAVIKPHFNHQSPVTAIAAIQELEELGTMDLNAPLRDDTIPQQQELSPPQAPVQLPQQQPPPPQQQSPQQHLAPPPLQPQPQLFQQPFPSFQLQQPFHQQQPQLPFQQPPQQHQLFQAPPSHHQQFHP | 486 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Spst4g02826 | 486 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
| Spst4g02826 | 486 | MobiDBLite | consensus disorder prediction | 238 | 259 | - | - | |
| Spst4g02826 | 486 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
| Spst4g02826 | 486 | MobiDBLite | consensus disorder prediction | 169 | 348 | - | - | |
| Spst4g02826 | 486 | ProSiteProfiles | Linker histone H1/H5 globular (H15) domain profile. | 37 | 107 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Spst4g02826 | 486 | Pfam | linker histone H1 and H5 family | 38 | 101 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Spst4g02826 | 486 | PANTHER | HISTONE H1 | 18 | 241 | - | - | |
| Spst4g02826 | 486 | SMART | h15plus2 | 35 | 102 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Spst4g02826 | 486 | MobiDBLite | consensus disorder prediction | 111 | 138 | - | - | |
| Spst4g02826 | 486 | PRINTS | AT-hook-like domain signature | 229 | 240 | IPR017956 | GO:0003677 | |
| Spst4g02826 | 486 | PRINTS | AT-hook-like domain signature | 318 | 328 | IPR017956 | GO:0003677 | |
| Spst4g02826 | 486 | PRINTS | AT-hook-like domain signature | 208 | 218 | IPR017956 | GO:0003677 | |
| Spst4g02826 | 486 | MobiDBLite | consensus disorder prediction | 395 | 410 | - | - | |
| Spst4g02826 | 486 | Gene3D | - | 33 | 116 | IPR036388 | - | |
| Spst4g02826 | 486 | SUPERFAMILY | "Winged helix" DNA-binding domain | 34 | 116 | IPR036390 | - | |
| Spst4g02826 | 486 | CDD | H15 | 35 | 104 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Spst4g02826 | 486 | Coils | Coil | 341 | 361 | - | - | |
| Spst4g02826 | 486 | MobiDBLite | consensus disorder prediction | 411 | 441 | - | - | |
| Spst4g02826 | 486 | MobiDBLite | consensus disorder prediction | 387 | 486 | - | - | |
| Spst4g02826 | 486 | MobiDBLite | consensus disorder prediction | 442 | 486 | - | - | |
| Spst4g02826 | 486 | FunFam | Histone H1.2 | 34 | 115 | - | - | |
| Spst4g02826 | 486 | SMART | AT_hook_2 | 208 | 220 | IPR017956 | GO:0003677 | |
| Spst4g02826 | 486 | SMART | AT_hook_2 | 125 | 137 | IPR017956 | GO:0003677 | |
| Spst4g02826 | 486 | SMART | AT_hook_2 | 320 | 332 | IPR017956 | GO:0003677 | |
| Spst4g02826 | 486 | SMART | AT_hook_2 | 231 | 243 | IPR017956 | GO:0003677 | |
| Spst4g02826 | 486 | SMART | AT_hook_2 | 182 | 194 | IPR017956 | GO:0003677 | |
| Spst4g02826 | 486 | SMART | AT_hook_2 | 279 | 291 | IPR017956 | GO:0003677 | |
| Spst4g02826 | 486 | MobiDBLite | consensus disorder prediction | 279 | 298 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Spst4g02826 | Spst-Chr4 | 67928017 | 67933342 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Spst4g02826 | 44 | 109 | Single Myb Histone (SMH) Gene Family | AT1G49950 | 39.394 | 4.45e-06 | 46.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Spst4g02826 | - | - | vun:114182142 | 583.563 |