Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02817 ATGACAGAGGCAGAGGTTATCATCTTCCGAGGAACACTTCGTGGCCACACTGATAAGGTCACCGCCATAAGCACCAACAACAATCCCAACATCATGGTTAGTTCCTCACACGACAAAACCCTCATCGTGTGGCGCATCAGAAAGGACTCCAACCCTTGCGCTTTTCCAACACTCCGGCTTACCGGCCACTCCGAGATCATCTCCGACGCCGTTTTGTCCTCCCACGGAGAACACGTCATCTCCTCCTCATGGGACGGCGAGCTCCGCCTTTGGAACATCACCAACGGCCACACCAAGCGCCGCTTCGTCGGCCACACGAACCAGGTCCTCTCCGTCTCGCTCTTCGACGACTCCGTGATCGCGTCCGGCGGCCGTGACAACACAGTGAGGGTGTGGAACGCTTGGGGACAGTGCATGGCGACCTTGGACGGAGACGGCGAGAACGGCCACACCGATTGGGTTTCGTGCGTGCGGTTCATCCCGGCGGAGACGCCGAGGCTGGTGACGGCGGCGTGGGACGGGAGCGTTAGGGTTTGGGACTTGGACATGAGTAACAAAGGCGCGTTGGTGAAGAGTTTCGCGACCTCCGGACACGAAGGTCGCGTGAACGCGGTGGCGCTGCCGCCAGACGGGTCGGTGATCGCAAGTGTCGGAAATGATGGGGTGGTGATTATATGGGACATGGAGGGAGGGGTTAAGCTTTACGAGTTTGACGTTGGTTGCGTTGTTCTTGCCATGTGTTTCTCTCCCAACAGGTTCTGGTTGAGCGTTGCCACAGAAGATAGAGTCATTGTTTGGGACTTGGAGAGTAAGAAGGTTCTTGAAGAATTGGAGGTTAAAAAGATTACGGATTTTTCGTCCTTAGCGTGTGTTTGA 876 0.5616 MTEAEVIIFRGTLRGHTDKVTAISTNNNPNIMVSSSHDKTLIVWRIRKDSNPCAFPTLRLTGHSEIISDAVLSSHGEHVISSSWDGELRLWNITNGHTKRRFVGHTNQVLSVSLFDDSVIASGGRDNTVRVWNAWGQCMATLDGDGENGHTDWVSCVRFIPAETPRLVTAAWDGSVRVWDLDMSNKGALVKSFATSGHEGRVNAVALPPDGSVIASVGNDGVVIIWDMEGGVKLYEFDVGCVVLAMCFSPNRFWLSVATEDRVIVWDLESKKVLEELEVKKITDFSSLACV 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02817 291 ProSiteProfiles Trp-Asp (WD) repeats profile. 13 47 IPR001680 GO:0005515
Spst4g02817 291 ProSitePatterns Trp-Asp (WD) repeats signature. 167 181 IPR019775 -
Spst4g02817 291 Gene3D - 6 289 IPR015943 GO:0005515
Spst4g02817 291 CDD WD40 10 278 - -
Spst4g02817 291 FunFam Receptor for activated C kinase 1 10 290 - -
Spst4g02817 291 ProSitePatterns Trp-Asp (WD) repeats signature. 214 228 IPR019775 -
Spst4g02817 291 ProSitePatterns Trp-Asp (WD) repeats signature. 79 93 IPR019775 -
Spst4g02817 291 ProSiteProfiles Trp-Asp (WD) repeats profile. 60 101 IPR001680 GO:0005515
Spst4g02817 291 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 102 133 - -
Spst4g02817 291 Pfam WD domain, G-beta repeat 59 92 IPR001680 GO:0005515
Spst4g02817 291 Pfam WD domain, G-beta repeat 136 180 IPR001680 GO:0005515
Spst4g02817 291 Pfam WD domain, G-beta repeat 99 133 IPR001680 GO:0005515
Spst4g02817 291 Pfam WD domain, G-beta repeat 11 44 IPR001680 GO:0005515
Spst4g02817 291 Pfam WD domain, G-beta repeat 191 227 IPR001680 GO:0005515
Spst4g02817 291 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 147 182 - -
Spst4g02817 291 SUPERFAMILY WD40 repeat-like 11 279 IPR036322 GO:0005515
Spst4g02817 291 ProSiteProfiles Trp-Asp (WD) repeats profile. 195 236 IPR001680 GO:0005515
Spst4g02817 291 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 60 96 - -
Spst4g02817 291 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 13 47 - -
Spst4g02817 291 ProSiteProfiles Trp-Asp (WD) repeats profile. 147 182 IPR001680 GO:0005515
Spst4g02817 291 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 195 229 - -
Spst4g02817 291 SMART WD40_4 135 180 IPR001680 GO:0005515
Spst4g02817 291 SMART WD40_4 95 133 IPR001680 GO:0005515
Spst4g02817 291 SMART WD40_4 53 92 IPR001680 GO:0005515
Spst4g02817 291 SMART WD40_4 186 227 IPR001680 GO:0005515
Spst4g02817 291 SMART WD40_4 6 45 IPR001680 GO:0005515
Spst4g02817 291 SMART WD40_4 230 267 IPR001680 GO:0005515
Spst4g02817 291 PANTHER RECEPTOR FOR ACTIVATED PROTEIN KINASE C RACK1 1 281 IPR045223 GO:0043022|GO:0045182
Spst4g02817 291 PRINTS G protein beta WD-40 repeat signature 79 93 IPR020472 -
Spst4g02817 291 PRINTS G protein beta WD-40 repeat signature 120 134 IPR020472 -
Spst4g02817 291 PRINTS G protein beta WD-40 repeat signature 167 181 IPR020472 -
Spst4g02817 291 ProSiteProfiles Trp-Asp (WD) repeats profile. 102 133 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02817 Spst-Chr4 67869447 67870786 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02817 75 268 U-box Gene Family AT2G33340 29.353 2.47e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02817 K14753 - gmx:100819000 350.903